Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ALSL_RS11740 Genome accession   NZ_AP018560
Coordinates   2514328..2515818 (-) Length   496 a.a.
NCBI ID   WP_126539394.1    Uniprot ID   A0A2Z6E740
Organism   Aerosticca soli strain Dysh456     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2509328..2520818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ALSL_RS11720 (ALSL_2357) - 2509370..2509999 (+) 630 WP_126539386.1 LysE family translocator -
  ALSL_RS11725 (ALSL_2358) - 2510060..2511088 (-) 1029 WP_126539388.1 LysR family transcriptional regulator -
  ALSL_RS11730 (ALSL_2359) aceB 2511208..2512800 (+) 1593 WP_126539390.1 malate synthase A -
  ALSL_RS11735 (ALSL_2360) aceA 2512875..2514161 (+) 1287 WP_126539392.1 isocitrate lyase -
  ALSL_RS11740 (ALSL_2361) comM 2514328..2515818 (-) 1491 WP_126539394.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ALSL_RS11745 - 2515966..2516223 (-) 258 WP_126539396.1 accessory factor UbiK family protein -
  ALSL_RS11750 (ALSL_2363) - 2516406..2516744 (+) 339 WP_126539398.1 P-II family nitrogen regulator -
  ALSL_RS11755 (ALSL_2364) gpmA 2516755..2517501 (-) 747 WP_126539400.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -
  ALSL_RS11760 (ALSL_2365) - 2517584..2518123 (-) 540 WP_126539402.1 cytochrome b -
  ALSL_RS11765 (ALSL_2366) hemF 2518201..2519109 (-) 909 WP_126539404.1 oxygen-dependent coproporphyrinogen oxidase -
  ALSL_RS11770 (ALSL_2367) - 2519315..2520097 (+) 783 WP_126539406.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 52858.84 Da        Isoelectric Point: 9.1206

>NTDB_id=70070 ALSL_RS11740 WP_126539394.1 2514328..2515818(-) (comM) [Aerosticca soli strain Dysh456]
MSLAIILSRAQEGVAAPQVMVEVHLSGGLPGTHIVGLPEAAVREARDRVRVAIQSTAFEYPSRKVTVNLAPAELPKDGGR
FDLAIALGILAAGGQVPRERLDACEFLGELALSGELRGVPGVLPALLRARARGRSIVVPRANASEAALVAGANVRVAGHL
SEVCSWLRGGDDLPAPTPAIGVDDAPPLPDLADVRGQTKARRALEIAAVGGHHLLLVGPPGTGKTMLAERLPGILPPLGE
SEALESCAVRSVAGQRVDPGLWRRRPFRAPHHTASAVALVGGGSQPRPGEISLAHHGVLFLDELPEFSRHVLEVLREPLE
SGRIVISRAARQATFPAQFQLVAAMNPCPCGYAGDGQRTCRCTPDQIQRYRARISGPLLDRIDLVVDVPRVPLGELAAAP
SEDSATVRARVLKARQHGLIRAGRANAEINPRELERDCALGAAERRWLEAALERLGLSARAYHRVLRVARSIADLDGGAP
LLDRTHLAEALQYRRF

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=70070 ALSL_RS11740 WP_126539394.1 2514328..2515818(-) (comM) [Aerosticca soli strain Dysh456]
ATGAGCCTGGCGATCATCCTGAGCCGCGCGCAGGAGGGTGTGGCGGCGCCGCAGGTGATGGTGGAAGTCCACCTTTCCGG
CGGTTTGCCCGGCACGCACATCGTGGGCTTGCCCGAAGCGGCCGTGCGCGAGGCGCGCGACCGTGTGCGGGTGGCGATCC
AGAGCACGGCTTTCGAATATCCCAGCCGCAAGGTCACCGTGAATCTGGCGCCGGCGGAGCTGCCCAAGGACGGCGGACGC
TTCGATCTCGCCATCGCGCTCGGTATTCTCGCCGCCGGCGGACAAGTGCCTCGCGAGAGGCTAGACGCCTGCGAATTCCT
GGGCGAGCTGGCCCTTTCGGGTGAGTTGCGCGGCGTGCCGGGCGTGCTGCCTGCGCTGCTGCGCGCGCGTGCCCGGGGGC
GCTCGATCGTGGTGCCGCGGGCCAATGCCAGCGAGGCGGCGCTGGTCGCCGGCGCCAATGTCCGTGTGGCCGGCCATCTT
TCCGAAGTCTGCAGCTGGCTGCGCGGCGGCGACGACCTGCCCGCGCCCACGCCCGCCATCGGCGTCGATGACGCGCCGCC
GTTGCCCGATCTCGCCGACGTGCGCGGCCAAACCAAGGCGCGACGTGCCCTGGAGATCGCCGCCGTGGGCGGGCATCATC
TGTTGCTCGTCGGCCCGCCCGGCACCGGCAAGACTATGCTGGCCGAGCGCCTGCCGGGCATCCTGCCGCCCTTGGGCGAA
AGCGAAGCCTTGGAAAGTTGCGCGGTGCGCTCGGTGGCCGGCCAGCGCGTCGACCCCGGGCTCTGGCGCCGCCGACCCTT
TCGCGCGCCCCACCACACCGCCTCGGCGGTAGCCCTGGTCGGTGGCGGCTCACAACCCAGGCCGGGGGAGATTTCCCTCG
CCCATCACGGCGTGCTGTTTCTCGACGAGCTGCCCGAGTTCAGCCGGCACGTGCTCGAGGTGCTGCGCGAGCCGCTCGAA
TCCGGCCGTATCGTGATTTCACGCGCGGCCCGCCAGGCGACCTTCCCCGCGCAGTTCCAGCTGGTCGCGGCGATGAATCC
GTGTCCCTGCGGCTATGCGGGAGACGGGCAGCGCACCTGCCGCTGCACGCCCGACCAGATCCAGCGTTACCGGGCACGTA
TTTCCGGGCCGCTGCTCGACCGCATCGACCTGGTGGTGGATGTCCCGCGCGTGCCGCTCGGCGAGCTTGCGGCCGCGCCG
AGCGAGGACTCGGCCACGGTCCGTGCCCGGGTGCTGAAGGCCCGCCAGCATGGGCTGATACGGGCCGGGCGCGCCAATGC
CGAGATCAATCCGCGTGAGCTGGAACGCGACTGCGCCCTGGGCGCCGCGGAACGGCGTTGGCTCGAGGCCGCGCTCGAGC
GGCTCGGCCTGTCGGCCCGGGCCTACCATCGCGTGCTCAGGGTGGCCCGTTCGATCGCCGACTTGGACGGCGGCGCGCCG
CTGCTGGACCGGACGCACTTGGCCGAGGCCCTGCAATACCGGCGTTTCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-393)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z6E740

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.444

100

0.554
  comM Haemophilus influenzae Rd KW20

54.183

100

0.548
  comM Glaesserella parasuis strain SC1401

53.693

100

0.542
  comM Vibrio campbellii strain DS40M4

54.032

100

0.54
  comM Legionella pneumophila str. Paris

51.6

100

0.52
  comM Legionella pneumophila strain ERS1305867

51.6

100

0.52
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.356

100

0.452

Multiple sequence alignment