Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NG827_RS02220 Genome accession   NZ_CP099533
Coordinates   493146..494699 (-) Length   517 a.a.
NCBI ID   WP_267097742.1    Uniprot ID   -
Organism   Xanthomonas sacchari strain LT6-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 488146..499699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NG827_RS02215 (NG827_02215) - 492226..493065 (+) 840 WP_267097741.1 alpha/beta fold hydrolase -
  NG827_RS02220 (NG827_02220) comM 493146..494699 (-) 1554 WP_267097742.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NG827_RS02225 (NG827_02225) - 494713..494982 (-) 270 WP_010341857.1 accessory factor UbiK family protein -
  NG827_RS02230 (NG827_02230) - 495159..495497 (+) 339 WP_010341856.1 P-II family nitrogen regulator -
  NG827_RS02235 (NG827_02235) - 495657..496388 (-) 732 WP_267097743.1 hypothetical protein -
  NG827_RS02240 (NG827_02240) speE 496637..497488 (-) 852 WP_017908019.1 polyamine aminopropyltransferase -

Sequence

Protein


Download         Length: 517 a.a.        Molecular weight: 54986.80 Da        Isoelectric Point: 8.6987

>NTDB_id=700448 NG827_RS02220 WP_267097742.1 493146..494699(-) (comM) [Xanthomonas sacchari strain LT6-2]
MSLALVHSRARAGVLAPPVRVEVHLSGGLPTTQIVGLPEAAVRESRDRVRAALLCAQYEFPARRITVNLAPADLPKEGGR
FDLPIALGILAAAGQLDPQVLGQYEFLGELALTGELRPVDGVLPAALAAAQAGRTLIVPADNGAEAALAQHVQAYTARTL
LEVCGLLNGSKTLPAATAPPTVAAPFPDLSDVRGQAQARRALEIAAAGHHHLLLIGSPGCGKTLLASRLPGILPEASEAE
ALESAAIASVSGRGVDPARWRQRPYRAPHHTASAVSLVGGGTHPRPGEISLAHHGVLFLDELPEWNRHALEVLREPLESG
QVTVSRAARSAEFPARFQLVAAMNPCPCGWAGDPSGRCRCSEDAVRRYRARISGPLLDRIDLHVEVPRLPPQALRADAPP
GEASAVVRERVEQARQRQQARAGRPNGQLGHSETLRDCRLQPRDEALLEQAIERLRLSARSLHRILRVARTIADLDASER
IATAHLTEAIAYRQLDRGEPTASAVGPTPPGARRLAG

Nucleotide


Download         Length: 1554 bp        

>NTDB_id=700448 NG827_RS02220 WP_267097742.1 493146..494699(-) (comM) [Xanthomonas sacchari strain LT6-2]
ATGAGCCTGGCGCTGGTGCACAGCCGTGCCCGCGCGGGGGTGCTTGCGCCTCCGGTTCGGGTCGAAGTCCATCTGTCCGG
CGGCCTGCCGACCACGCAGATCGTCGGCCTGCCCGAGGCGGCGGTACGCGAGTCGCGCGATCGCGTCCGCGCCGCCCTGC
TCTGCGCGCAGTACGAATTTCCGGCACGGCGGATCACGGTCAACCTGGCGCCGGCCGACCTGCCCAAGGAGGGCGGTCGC
TTCGACCTGCCGATCGCGCTGGGCATCCTCGCCGCCGCCGGCCAGCTCGACCCGCAGGTGCTCGGCCAGTACGAATTCCT
CGGCGAACTGGCCTTGACCGGCGAACTGCGTCCGGTCGACGGCGTCCTGCCGGCCGCACTGGCCGCCGCCCAGGCTGGGC
GCACCCTGATCGTCCCGGCCGACAACGGCGCCGAGGCCGCGTTGGCGCAACACGTACAGGCCTACACCGCACGCACCCTG
CTGGAAGTCTGCGGCCTGCTCAACGGCAGCAAGACCCTGCCCGCTGCCACCGCGCCGCCCACGGTCGCCGCGCCCTTCCC
CGACCTGAGCGACGTCCGCGGCCAGGCGCAGGCCCGCCGCGCCCTGGAGATCGCCGCGGCCGGGCATCACCACCTGTTGC
TGATCGGCAGCCCCGGCTGCGGCAAGACCCTGCTGGCCTCGCGCCTGCCCGGGATCCTGCCCGAGGCCAGCGAAGCCGAG
GCACTGGAGAGCGCGGCCATCGCTTCGGTCAGCGGCCGCGGCGTGGATCCGGCACGCTGGCGGCAACGCCCCTACCGCGC
ACCGCACCACACCGCCAGCGCGGTGTCGCTGGTCGGCGGCGGCACTCATCCGCGCCCGGGCGAGATCTCGCTGGCGCACC
ACGGCGTGCTGTTCCTGGACGAACTGCCGGAGTGGAACCGGCATGCGCTGGAAGTGCTGCGCGAGCCGCTGGAATCGGGC
CAGGTGACCGTGTCGCGCGCGGCGCGCAGCGCCGAGTTTCCCGCGCGCTTCCAACTGGTGGCGGCGATGAATCCCTGCCC
CTGCGGCTGGGCCGGCGACCCCAGCGGTCGCTGCCGCTGCAGCGAGGACGCGGTGCGGCGCTACCGCGCGCGCATCTCCG
GCCCGCTGCTGGACCGCATCGACCTGCACGTGGAAGTGCCGCGGCTGCCGCCACAGGCGCTGCGCGCCGATGCGCCGCCC
GGCGAAGCCAGCGCCGTCGTGCGCGAGCGCGTGGAGCAGGCGCGGCAACGCCAGCAGGCCCGCGCCGGCCGGCCCAACGG
CCAGCTCGGCCACAGCGAAACCCTGCGCGACTGCCGCCTGCAACCGCGCGACGAGGCGCTGCTGGAACAGGCCATCGAGC
GACTGCGGCTGTCGGCGCGCTCGCTGCATCGGATCCTGCGCGTGGCCCGCACCATCGCCGACCTGGACGCCAGCGAGCGC
ATCGCCACCGCGCACCTGACCGAGGCCATCGCGTACCGGCAACTGGATCGTGGCGAGCCAACGGCGAGCGCCGTGGGTCC
GACGCCACCCGGGGCACGCCGCCTGGCAGGTTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.311

96.518

0.534
  comM Haemophilus influenzae Rd KW20

54.762

97.485

0.534
  comM Vibrio campbellii strain DS40M4

54.224

98.453

0.534
  comM Glaesserella parasuis strain SC1401

52.976

97.485

0.516
  comM Legionella pneumophila str. Paris

50.302

96.132

0.484
  comM Legionella pneumophila strain ERS1305867

50.302

96.132

0.484
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.58

98.453

0.449