Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NG829_RS02185 Genome accession   NZ_CP099532
Coordinates   488397..489920 (-) Length   507 a.a.
NCBI ID   WP_267121812.1    Uniprot ID   -
Organism   Xanthomonas sacchari strain LT6-16-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 483397..494920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NG829_RS02170 (NG829_02175) - 484421..485263 (+) 843 WP_267117647.1 alpha/beta fold hydrolase -
  NG829_RS02175 (NG829_02180) - 485662..486750 (+) 1089 WP_226977771.1 carotenoid 1,2-hydratase -
  NG829_RS02180 (NG829_02185) - 486862..487905 (+) 1044 WP_152237305.1 lipocalin-like domain-containing protein -
  NG829_RS02185 (NG829_02190) comM 488397..489920 (-) 1524 WP_267121812.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NG829_RS02190 (NG829_02195) - 489934..490203 (-) 270 WP_010341857.1 accessory factor UbiK family protein -
  NG829_RS02195 (NG829_02200) - 490380..490718 (+) 339 WP_010341856.1 P-II family nitrogen regulator -
  NG829_RS02200 (NG829_02205) - 490881..491096 (-) 216 WP_267121813.1 hypothetical protein -
  NG829_RS02205 (NG829_02210) - 491093..491611 (-) 519 WP_267121814.1 hypothetical protein -
  NG829_RS02210 (NG829_02215) speE 491864..492715 (-) 852 WP_017916998.1 polyamine aminopropyltransferase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54078.77 Da        Isoelectric Point: 8.5150

>NTDB_id=700431 NG829_RS02185 WP_267121812.1 488397..489920(-) (comM) [Xanthomonas sacchari strain LT6-16-1]
MSLALVHSRARAGVLAPPVRVEVHLSGGLPTTQIVGLPEAAVRESRDRVRAALLCAQYEFPARRITVNLAPADLPKEGGR
FDLPIALGILAAAGQLDPQVLGQYEFLGELALTGELRPVDGVLPAALAAAQAGRTLIVPADNGAEAALAQHVQAYTARTL
LEVCGLLNGSKTLPAATAPPTVAAPFPDLSDVRGQAQARRALEIAAAGHHHLLLIGSPGCGKTLLASRLPGILPEASEAE
ALESAAIASVSGRGVDPARWRQRPYRAPHHTASAVSLVGGGTHPRPGEISLAHHGVLFLDELPEWNRHALEVLREPLESG
QVTVSRAARSAEFPARFQLVAAMNPCPCGWAGDPSGRCRCSEDAVRRYRARISGPLLDRIDLHVEVPRLPPQALRADAPP
GEASAVVRERVEQARQRQQARAGRPNGQLGHSETLRDCRLQPRDEALLEQAIERLRLSARSLHRILRVARTIADLDASER
IATAHLTEAIAYRQLDRGEPAPVARSA

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=700431 NG829_RS02185 WP_267121812.1 488397..489920(-) (comM) [Xanthomonas sacchari strain LT6-16-1]
ATGAGCCTGGCGCTGGTGCACAGCCGTGCCCGCGCGGGGGTGCTTGCGCCTCCGGTTCGGGTCGAAGTCCATCTGTCCGG
CGGCCTGCCGACCACCCAGATCGTCGGCCTGCCCGAGGCGGCGGTACGCGAATCGCGCGACCGCGTCCGCGCCGCCCTGC
TCTGCGCGCAGTACGAGTTCCCTGCACGGCGGATCACGGTCAACCTGGCCCCGGCCGACCTGCCCAAGGAGGGCGGCCGC
TTCGACCTGCCGATCGCGCTGGGCATCCTCGCCGCCGCCGGCCAGCTCGACCCGCAGGTGCTCGGCCAGTACGAATTCCT
CGGCGAACTGGCCTTGACCGGCGAACTGCGTCCGGTCGACGGCGTCCTGCCGGCCGCACTGGCCGCCGCCCAGGCTGGGC
GCACCCTGATCGTCCCGGCCGACAACGGCGCCGAGGCCGCACTGGCGCAACACGTGCAGGCCTACACCGCACGCACCCTG
CTGGAAGTCTGTGGATTGCTCAACGGCAGCAAGACCCTGCCCGCGGCCACCGCGCCGCCCACGGTCGCCGCCCCCTTTCC
CGACCTGAGCGACGTGCGCGGCCAGGCGCAGGCGCGGCGCGCCCTGGAGATCGCCGCGGCCGGGCATCACCACCTGTTGC
TGATCGGCAGCCCCGGCTGCGGCAAGACCCTGCTGGCCTCGCGCCTACCCGGGATTCTGCCCGAGGCCAGCGAAGCCGAG
GCCCTGGAGAGCGCGGCCATCGCTTCGGTCAGCGGCCGCGGTGTGGACCCGGCGCGCTGGCGGCAACGCCCCTACCGCGC
ACCGCACCACACCGCCAGCGCGGTGTCGCTGGTCGGCGGCGGCACTCATCCGCGCCCGGGCGAGATCTCGCTGGCGCACC
ACGGCGTGCTGTTCCTGGACGAACTGCCGGAGTGGAACCGGCATGCGCTGGAAGTGCTGCGCGAGCCGCTGGAATCGGGC
CAGGTGACCGTGTCGCGCGCGGCGCGCAGCGCCGAGTTTCCCGCGCGCTTCCAACTGGTGGCGGCGATGAATCCCTGCCC
CTGCGGCTGGGCCGGCGACCCCAGCGGTCGCTGCCGCTGCAGCGAGGACGCGGTGCGGCGATACCGCGCGCGCATCTCCG
GCCCGCTGCTGGACCGCATCGACCTGCACGTGGAAGTGCCGCGGCTGCCGCCACAGGCGCTGCGCGCCGATGCGCCGCCC
GGCGAAGCCAGCGCCGTCGTGCGCGAGCGCGTGGAGCAGGCGCGGCAACGCCAGCAGGCCCGCGCCGGCCGGCCCAACGG
CCAGCTCGGCCACAGCGAAACCCTGCGCGACTGCCGCCTGCAGCCGCGCGACGAGGCGCTGCTGGAACAGGCCATCGAAC
GCCTGCGGCTGTCGGCGCGCTCGCTGCATCGGATCCTGCGCGTGGCCCGCACCATCGCCGACCTGGACGCCAGCGAGCGT
ATCGCCACCGCGCACCTGACCGAAGCCATCGCGTACCGGCAACTGGATCGCGGCGAACCGGCCCCGGTGGCGCGTAGCGC
CTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.311

98.422

0.544
  comM Haemophilus influenzae Rd KW20

54.762

99.408

0.544
  comM Vibrio campbellii strain DS40M4

54.509

98.422

0.536
  comM Glaesserella parasuis strain SC1401

52.976

99.408

0.527
  comM Legionella pneumophila str. Paris

50.302

98.028

0.493
  comM Legionella pneumophila strain ERS1305867

50.302

98.028

0.493
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.58

100

0.458