Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NG828_RS02275 Genome accession   NZ_CP099530
Coordinates   504930..506483 (-) Length   517 a.a.
NCBI ID   WP_152244423.1    Uniprot ID   -
Organism   Xanthomonas sacchari strain YT9-19-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 499930..511483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NG828_RS02270 (NG828_02270) - 504010..504849 (+) 840 WP_267082651.1 alpha/beta hydrolase -
  NG828_RS02275 (NG828_02275) comM 504930..506483 (-) 1554 WP_152244423.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NG828_RS02280 (NG828_02280) - 506497..506766 (-) 270 WP_017908021.1 accessory factor UbiK family protein -
  NG828_RS02285 (NG828_02285) - 506943..507281 (+) 339 WP_010341856.1 P-II family nitrogen regulator -
  NG828_RS02290 (NG828_02290) - 507444..508175 (-) 732 WP_267082652.1 hypothetical protein -
  NG828_RS02295 (NG828_02295) speE 508428..509279 (-) 852 WP_017916998.1 polyamine aminopropyltransferase -
  NG828_RS02300 (NG828_02300) speA 509584..511473 (+) 1890 WP_017908018.1 arginine decarboxylase -

Sequence

Protein


Download         Length: 517 a.a.        Molecular weight: 54987.78 Da        Isoelectric Point: 8.6987

>NTDB_id=700412 NG828_RS02275 WP_152244423.1 504930..506483(-) (comM) [Xanthomonas sacchari strain YT9-19-2]
MSLALVHSRARAGVLAPPVRVEVHLSGGLPTTQIVGLPEAAVRESRDRVRAALLCAQYEFPARRITVNLAPADLPKEGGR
FDLPIALGILAAAGQLDPQVLGQYEFLGELALTGELRPVDGVLPAALAAAQAGRTLIVPADNGAEAALAQHVQAYTARTL
LEVCGLLNGSKTLPAATAPPTVAAPFPDLSDVRGQAQARRALEIAAAGHHHLLLIGSPGCGKTLLASRLPGILPEASEAE
ALESAAIASVSGRGVDPARWRQRPYRAPHHTASAVSLVGGGTHPRPGEISLAHHGVLFLDELPEWNRHALEVLREPLESG
QVTVSRAARSAEFPARFQLVAAMNPCPCGWAGDPSGRCRCSEDAVRRYRARISGPLLDRIDLHVEVPRLPPQALRADAPP
GEASAVVRERVEQARQRQQARAGRPNGQLGHSETLRDCRLQPRDEALLEQAIERLRLSARSLHRILRVARTIADLDASER
IATAHLTEAIAYRQLDRGEATANAVGPTPPGARRLAG

Nucleotide


Download         Length: 1554 bp        

>NTDB_id=700412 NG828_RS02275 WP_152244423.1 504930..506483(-) (comM) [Xanthomonas sacchari strain YT9-19-2]
ATGAGCCTGGCGCTGGTGCACAGCCGTGCCCGCGCGGGGGTGCTTGCGCCTCCGGTTCGGGTCGAAGTTCATCTGTCCGG
CGGCCTGCCGACCACCCAGATCGTCGGCCTGCCCGAGGCGGCGGTACGCGAGTCGCGCGATCGCGTCCGCGCCGCCCTGC
TCTGCGCGCAGTACGAATTTCCGGCACGGCGGATCACCGTCAACCTGGCGCCGGCCGACCTGCCCAAGGAGGGCGGTCGC
TTCGACCTACCGATCGCGCTGGGCATCCTCGCCGCCGCCGGCCAGCTCGACCCGCAGGTGCTCGGCCAGTACGAATTCCT
CGGTGAACTGGCCTTGACCGGCGAACTGCGTCCGGTCGACGGCGTCCTGCCGGCCGCACTGGCCGCCGCCCAGGCTGGGC
GCACCCTGATCGTCCCGGCCGACAACGGCGCCGAGGCCGCGTTGGCGCAACACGTGCAGGCCTACACCGCACGCACCCTG
CTGGAAGTCTGCGGCCTGCTCAACGGCAGCAAGACCCTGCCCGCGGCCACCGCGCCGCCCACGGTCGCCGCGCCCTTTCC
CGACCTGAGCGACGTGCGCGGCCAGGCGCAGGCGCGGCGCGCCCTGGAGATCGCCGCGGCCGGGCATCACCACCTGTTGC
TGATCGGCAGCCCCGGCTGCGGCAAGACCCTGCTGGCCTCGCGCCTGCCCGGGATTCTGCCCGAGGCCAGCGAAGCCGAG
GCCCTGGAGAGCGCGGCCATCGCTTCGGTCAGCGGCCGCGGTGTGGACCCGGCGCGCTGGCGGCAACGCCCCTACCGCGC
ACCGCACCACACCGCCAGCGCGGTGTCGCTGGTCGGCGGCGGCACTCATCCGCGCCCGGGCGAGATCTCGCTGGCGCACC
ACGGCGTGCTGTTCCTGGACGAACTGCCGGAGTGGAACCGGCATGCGCTGGAAGTGCTGCGCGAGCCGCTGGAGTCGGGC
CAGGTGACCGTGTCGCGCGCGGCGCGCAGCGCCGAGTTTCCCGCGCGCTTCCAACTGGTGGCGGCGATGAACCCCTGCCC
GTGCGGCTGGGCCGGCGACCCCAGCGGCCGCTGCCGCTGCAGCGAGGACGCGGTACGGCGCTACCGCGCGCGCATCTCCG
GCCCACTGCTGGACCGCATCGACCTGCACGTGGAAGTGCCGCGGCTGCCGCCACAGGCGCTGCGCGCCGATGCGCCGCCC
GGCGAAGCCAGCGCCGTCGTGCGCGAGCGCGTGGAGCAGGCGCGGCAACGCCAGCAGGCCCGCGCCGGCCGGCCCAACGG
CCAGCTCGGCCACAGCGAAACCCTGCGCGACTGCCGCCTGCAGCCGCGCGACGAGGCGCTGCTGGAACAGGCCATCGAGC
GCCTGCGGCTGTCGGCGCGCTCGCTGCATCGGATCCTGCGCGTGGCCCGCACCATCGCCGACCTGGACGCCAGCGAGCGC
ATCGCCACCGCGCACCTGACCGAGGCCATCGCATACCGGCAACTGGATCGCGGGGAGGCGACGGCGAACGCCGTGGGTCC
GACGCCACCCGGGGCACGCCGCCTGGCAGGGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.311

96.518

0.534
  comM Haemophilus influenzae Rd KW20

54.762

97.485

0.534
  comM Vibrio campbellii strain DS40M4

54.224

98.453

0.534
  comM Glaesserella parasuis strain SC1401

52.976

97.485

0.516
  comM Legionella pneumophila str. Paris

50.302

96.132

0.484
  comM Legionella pneumophila strain ERS1305867

50.302

96.132

0.484
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.58

98.453

0.449