Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NDO58_RS00640 Genome accession   NZ_CP099513
Coordinates   139094..140614 (-) Length   506 a.a.
NCBI ID   WP_049131529.1    Uniprot ID   -
Organism   Klebsiella sp. ZYC-1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 134094..145614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDO58_RS00630 (NDO58_00630) hdfR 137792..138613 (-) 822 WP_024360645.1 HTH-type transcriptional regulator HdfR -
  NDO58_RS00635 (NDO58_00635) - 138732..139070 (+) 339 WP_004097464.1 DUF413 domain-containing protein -
  NDO58_RS00640 (NDO58_00640) comM 139094..140614 (-) 1521 WP_049131529.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NDO58_RS00645 (NDO58_00645) ilvL 140964..141062 (+) 99 WP_001311244.1 ilv operon leader peptide -
  NDO58_RS00650 (NDO58_00650) ilvG 141202..142848 (+) 1647 WP_024360643.1 acetolactate synthase 2 catalytic subunit -
  NDO58_RS00655 (NDO58_00655) ilvM 142845..143102 (+) 258 WP_004107599.1 acetolactate synthase 2 small subunit -
  NDO58_RS00660 (NDO58_00660) - 143119..144048 (+) 930 WP_004097473.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55084.25 Da        Isoelectric Point: 7.6080

>NTDB_id=700329 NDO58_RS00640 WP_049131529.1 139094..140614(-) (comM) [Klebsiella sp. ZYC-1]
MSLAIVYTRAALGIGAPLITVEVHISNGLPGLTMVGLPETTVREARDRVRSAIINSGYAYPAKKITINLAPADLPKEGGR
YDLPIALALLVASEQLNATRLNQYEFVGELALTGALRGVPGAISSAMEAIKAGRKIVISNENSPEVGLIGGSDCLIATDL
QEVCAFLEGRNPLTHPLSEGEYSDDTPVDLRDVIGQQQGKRALEIIAAGGHNLLMIGPPGTGKTMLASRLPGLLPPLSNQ
EALESAAIHSLVDSTRATKNWRRRPFRAPHHSASLAAMVGGGSIPAPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GVIHISRTRAKIDYPARFQLIAAMNPSPTGHYQGQHNRASPQQTLRYLGRLSGPFLDRFDLSLEIPLPPPGVLSQGTHEE
ESSASVRQRVLAARERQLSRQKKLNAHLGNDEMKICCRLHQDDAIWLEQTLTQLGLSIRAWQRLLKVSRTIADIEAVDCI
ERHHLQEALGYRAIDRMLSHLQKMMA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=700329 NDO58_RS00640 WP_049131529.1 139094..140614(-) (comM) [Klebsiella sp. ZYC-1]
ATGTCACTCGCCATTGTTTACACCCGCGCCGCTCTCGGGATCGGCGCACCGCTTATCACGGTTGAAGTTCATATCAGCAA
CGGACTCCCTGGCCTGACCATGGTAGGGCTGCCGGAAACAACGGTGAGAGAAGCGCGTGACCGGGTACGTAGTGCGATTA
TCAACAGCGGCTACGCTTATCCGGCGAAAAAAATCACCATTAATCTGGCTCCGGCCGATCTGCCAAAAGAAGGTGGAAGA
TATGATTTACCTATCGCTCTCGCGCTTCTGGTGGCCTCAGAGCAGCTAAATGCTACCAGGCTAAATCAATATGAGTTTGT
CGGCGAGCTGGCGCTTACAGGCGCTCTGCGTGGCGTTCCTGGTGCCATATCCAGCGCCATGGAGGCAATAAAAGCGGGTC
GGAAGATTGTTATCTCTAATGAGAATTCTCCGGAGGTAGGATTAATCGGCGGCAGTGACTGCCTTATCGCCACCGATCTC
CAGGAAGTCTGCGCTTTTCTCGAAGGTCGCAATCCCCTCACTCATCCACTCTCAGAAGGAGAGTATTCGGATGATACACC
GGTTGACCTGCGTGATGTTATTGGCCAGCAGCAGGGGAAACGCGCGCTGGAAATTATCGCCGCAGGTGGCCACAACCTGC
TGATGATAGGCCCGCCCGGCACCGGTAAAACGATGCTCGCCAGTCGATTACCGGGACTGCTACCGCCGTTGAGTAACCAG
GAGGCGCTGGAAAGCGCGGCAATACATAGCCTGGTCGATTCCACGCGTGCGACGAAAAATTGGCGTCGCAGGCCCTTTCG
CGCCCCGCATCATAGCGCCTCCCTGGCGGCCATGGTGGGTGGCGGCTCAATTCCGGCACCAGGAGAGATCTCGCTGGCCC
ATAATGGCGTCCTGTTTCTGGATGAGCTGCCTGAATTCGAACGCAGGGTACTGGATGCGTTACGAGAACCGATTGAGTCA
GGGGTTATCCATATCTCTCGCACGCGCGCCAAAATTGATTATCCGGCCCGTTTCCAGCTTATTGCAGCGATGAACCCCAG
CCCGACAGGGCACTATCAGGGCCAGCATAATCGCGCCTCGCCACAACAGACGCTACGCTACCTGGGCCGTTTATCCGGCC
CGTTTCTCGACCGGTTCGATCTCTCTCTGGAGATCCCACTTCCGCCGCCGGGAGTACTCAGTCAGGGAACACACGAGGAG
GAAAGTAGCGCCAGCGTGCGTCAACGTGTTCTGGCCGCACGCGAAAGACAGCTATCACGACAGAAAAAACTTAATGCGCA
TCTGGGAAATGATGAGATGAAAATCTGCTGCCGGCTTCATCAAGATGACGCTATCTGGCTGGAGCAGACGCTAACTCAGC
TTGGACTTTCAATCCGCGCCTGGCAACGCCTGCTTAAAGTTTCCCGGACTATTGCGGATATTGAAGCCGTCGATTGCATC
GAACGTCATCATCTGCAGGAGGCTCTCGGCTATAGGGCAATAGACAGAATGTTGAGCCATCTACAAAAAATGATGGCGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

59.921

100

0.603
  comM Glaesserella parasuis strain SC1401

59.449

100

0.597
  comM Vibrio cholerae strain A1552

59.562

99.209

0.591
  comM Vibrio campbellii strain DS40M4

58.964

99.209

0.585
  comM Legionella pneumophila str. Paris

48.992

98.024

0.48
  comM Legionella pneumophila strain ERS1305867

48.992

98.024

0.48
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.862

100

0.449