Detailed information NTG0070025

Bioinformatically predicted

Overview

• Name: comA
• Type: Regulator
• Locus tag: LpgJCM5343_RS02805
• Genome accession: NZ_AP018549
• Coordinates: 599383..601542 (+)
• Length: 719 a.a.
• NCBI ID: WP_101890482.1
• Uniprot ID: -
• Organism: Lactobacillus paragasseri strain JCM 5343
• Function: processing and transport of ComC (predicted from homology) Competence regulation

Genomic Context

Location: 594383..606542

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LpgJCM5343_RS02780 (LpgJCM5343_05480)	udk	594807..595442 (-)	636	WP_003649222.1	uridine kinase	-
LpgJCM5343_RS02785 (LpgJCM5343_05490)	-	595604..596971 (+)	1368	WP_048684932.1	MFS transporter	-
LpgJCM5343_RS02790 (LpgJCM5343_05500)	-	597114..597266 (+)	153	WP_003649220.1	hypothetical protein	-
LpgJCM5343_RS02795 (LpgJCM5343_05510)	-	597257..598576 (+)	1320	WP_223890308.1	sensor histidine kinase	-
LpgJCM5343_RS02800 (LpgJCM5343_05520)	-	598573..599370 (+)	798	WP_003649217.1	LytR/AlgR family response regulator transcription factor	-
LpgJCM5343_RS02805 (LpgJCM5343_05530)	comA	599383..601542 (+)	2160	WP_101890482.1	peptide cleavage/export ABC transporter	Regulator
LpgJCM5343_RS02810 (LpgJCM5343_05540)	-	601553..602146 (+)	594	WP_003649215.1	HlyD family efflux transporter periplasmic adaptor subunit	-
LpgJCM5343_RS02820 (LpgJCM5343_05550)	-	602448..602675 (+)	228	WP_049159833.1	Blp family class II bacteriocin	-
LpgJCM5343_RS02825 (LpgJCM5343_05560)	-	602685..602882 (+)	198	WP_003649213.1	Blp family class II bacteriocin	-
LpgJCM5343_RS02835 (LpgJCM5343_05580)	-	603958..604242 (+)	285	WP_101890484.1	bacteriocin immunity protein	-
LpgJCM5343_RS02840 (LpgJCM5343_05590)	traF	604422..604916 (+)	495	WP_101890485.1	conjugal transfer protein TraF	-
LpgJCM5343_RS02845 (LpgJCM5343_05600)	-	605066..605245 (+)	180	WP_101890486.1	bacteriocin	-
LpgJCM5343_RS02850 (LpgJCM5343_05610)	-	605298..605483 (+)	186	WP_101890487.1	Blp family class II bacteriocin	-
LpgJCM5343_RS02855 (LpgJCM5343_05620)	-	605601..605861 (+)	261	WP_101890488.1	hypothetical protein	-

Sequence

Protein

• Length: 719 a.a.
• Molecular weight: 81084.44 Da
• Isoelectric Point: 7.9688

>NTDB_id=70025 LpgJCM5343_RS02805 WP_101890482.1 599383..601542(+) (comA) [Lactobacillus paragasseri strain JCM 5343]
MLFKYKCVYVPQVDEMDCGVACLAMILKQYHSRVSLAHLRHEARTNLEGTTALGLVKTAQKFNFKTEAVKADMSLFDENS
IQYPFIAHVLKQGELLHYYVVLKNAKNYLVIADPNPSVGVVKMPKDKFAQEWTGVALFMVPNEDFEPIKEKKNNLWSLFP
YMFKQKRLMINIILAALLMTIISICSSYFVQGIIDTYIPDGTYQTLSILAVGLLIAYVFNSIFSYGQNFLLNILGQRLSI
DLNLRYIRHIFELPMEFFVTRRTGEITSRFSDASRIIDALASTVISLFLDLSIVIVMGLVLAAQNMTLFGITLLALPIYA
VVILGFTKKFEKLNNEQMESNAVLSSSVIEDIQGIETIKALNSENTRYRRIDSQFVDYLKKSFKYSKTESLQTALKTFIQ
LSLNVIVLWVGAKIVMQGQLSIGQLMTFNALLAYFIDPLQSIINLQPRLQSASVAQNRLNEVYQVKSEFNQKATIEDRKL
LEGNIEYKNVDYSYGYGTDVLKDINLKISQGEKLTIVGMSGSGKSTMVKLLVDFFSPSKGQVTLNGHATSEIDKHTLRSY
VNYVPQTPYIFSGTVKENLLLGCRPDITEEDVIKACQIAEIDQEIANLPLQFETKLDENAKILSGGQKQRLTIARALLSP
AKVFIFDEVTSGLDTITEKKVIDNLMKLKDKTIIFIAHRLAIAERADKVVVIDHGQIVEEGSHSELMSKHGFYYDLVKG

Nucleotide

• Length: 2160 bp

>NTDB_id=70025 LpgJCM5343_RS02805 WP_101890482.1 599383..601542(+) (comA) [Lactobacillus paragasseri strain JCM 5343]
ATGTTATTCAAATATAAATGCGTATACGTGCCACAAGTGGATGAGATGGATTGCGGCGTTGCTTGTCTAGCAATGATCTT
AAAGCAATATCATTCTCGCGTATCTTTAGCACATTTACGTCATGAAGCTCGTACTAATCTTGAAGGCACAACTGCTTTAG
GACTAGTGAAGACAGCACAAAAATTTAATTTCAAAACAGAAGCCGTAAAAGCAGATATGTCTTTATTTGATGAGAATAGT
ATTCAATATCCTTTTATTGCCCACGTCCTAAAACAAGGAGAACTACTTCATTATTACGTAGTTCTTAAAAATGCTAAGAA
TTATTTAGTAATTGCAGATCCTAATCCATCAGTTGGTGTAGTAAAGATGCCAAAAGACAAATTTGCTCAAGAATGGACTG
GTGTTGCACTCTTTATGGTTCCTAACGAAGACTTTGAACCAATCAAAGAAAAGAAGAATAATTTATGGTCTCTCTTTCCA
TATATGTTTAAACAAAAGCGGCTGATGATTAACATCATTTTAGCCGCTTTATTAATGACCATAATTAGTATCTGTAGTTC
ATATTTTGTTCAAGGAATAATTGATACTTACATTCCAGATGGAACCTATCAGACTCTTTCGATCTTAGCTGTTGGACTAT
TAATTGCTTATGTCTTTAATTCAATTTTTTCTTATGGACAGAATTTTTTATTAAATATTTTAGGTCAAAGATTAAGTATT
GATCTAAATCTGCGATACATCAGGCATATTTTTGAATTACCAATGGAATTCTTTGTAACAAGAAGAACGGGTGAAATTAC
TTCGCGTTTTTCTGATGCAAGTAGAATTATTGACGCTTTGGCAAGTACAGTTATTTCGCTCTTCTTAGATCTCTCAATTG
TGATTGTGATGGGATTAGTCTTAGCAGCACAAAATATGACATTATTTGGGATTACACTGTTAGCTTTGCCTATTTATGCA
GTTGTAATTCTAGGTTTTACTAAAAAGTTTGAAAAACTAAATAACGAACAAATGGAAAGTAATGCTGTTTTGAGTTCTTC
AGTTATTGAAGATATTCAAGGAATTGAAACTATTAAAGCTTTAAATAGTGAGAATACAAGATATAGAAGAATCGATAGTC
AGTTTGTAGATTACTTAAAGAAGTCATTTAAATATAGTAAGACTGAGAGTTTACAGACAGCACTCAAGACATTTATTCAA
TTATCTCTTAATGTAATTGTTCTTTGGGTTGGTGCAAAGATTGTAATGCAAGGACAATTGAGCATTGGTCAGTTAATGAC
GTTCAATGCATTGCTGGCATATTTCATTGATCCCTTGCAAAGTATTATTAATTTACAACCGCGACTTCAATCAGCTAGTG
TTGCTCAAAATCGATTAAATGAGGTCTATCAAGTAAAAAGTGAATTCAATCAGAAGGCTACTATTGAAGATCGTAAGCTC
CTAGAAGGAAATATTGAATATAAGAATGTGGATTATAGCTATGGTTATGGCACAGATGTCTTAAAAGATATTAATCTCAA
AATTAGCCAGGGCGAAAAATTAACGATTGTTGGAATGAGTGGTTCTGGAAAATCTACGATGGTTAAGTTGTTAGTAGATT
TCTTTTCGCCAAGTAAAGGTCAGGTTACATTAAATGGACATGCAACAAGTGAGATTGATAAGCATACGTTGCGGTCATAT
GTAAATTATGTACCTCAAACTCCATATATCTTTTCTGGAACAGTTAAAGAGAATTTGTTGTTAGGTTGTAGGCCAGATAT
CACTGAAGAAGATGTAATAAAGGCTTGTCAAATTGCTGAGATTGACCAAGAAATAGCTAATCTACCTTTGCAATTTGAAA
CAAAATTAGATGAAAATGCCAAAATTTTATCTGGTGGACAAAAACAAAGGTTAACTATTGCCCGGGCATTACTATCTCCT
GCAAAGGTATTTATTTTTGATGAAGTAACAAGTGGCTTAGATACAATTACTGAGAAGAAAGTGATTGATAATTTGATGAA
GCTAAAGGATAAGACAATTATCTTTATTGCGCATCGACTAGCAATTGCAGAACGGGCAGACAAGGTAGTTGTAATTGATC
ATGGTCAAATAGTTGAAGAAGGCAGCCACAGCGAATTGATGAGTAAGCATGGTTTTTACTATGACTTAGTGAAGGGATAG

Domains

Predicted by InterproScan.

• ABC transporter (ABC_tran) (501-651)

• Peptidase C39 family (Peptidase_C39) (8-143)

• ABC transporter transmembrane region (ABC_membrane) (169-439)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Streptococcus mitis NCTC 12261	57.687	98.609	0.569
comA	Streptococcus mitis SK321	57.405	98.609	0.566
comA	Streptococcus pneumoniae Rx1	57.264	98.609	0.565
comA	Streptococcus pneumoniae D39	57.264	98.609	0.565
comA	Streptococcus pneumoniae R6	57.264	98.609	0.565
comA	Streptococcus pneumoniae TIGR4	57.123	98.609	0.563
comA	Streptococcus gordonii str. Challis substr. CH1	55.43	98.609	0.547
comA/nlmT	Streptococcus mutans UA159	53.607	98.331	0.527