Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   L1F06_RS01575 Genome accession   NZ_CP099397
Coordinates   327949..329442 (-) Length   497 a.a.
NCBI ID   WP_129482021.1    Uniprot ID   -
Organism   Pseudomonas hydrolytica strain DSWY01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 322949..334442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1F06_RS01560 (L1F06_001560) - 323698..325370 (+) 1673 Protein_311 bifunctional diguanylate cyclase/phosphodiesterase -
  L1F06_RS01565 (L1F06_001565) - 325405..326796 (-) 1392 WP_129482023.1 NorM family multidrug efflux MATE transporter -
  L1F06_RS01570 (L1F06_001570) - 326936..327853 (+) 918 WP_129482022.1 LysR substrate-binding domain-containing protein -
  L1F06_RS01575 (L1F06_001575) comM 327949..329442 (-) 1494 WP_129482021.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  L1F06_RS01580 (L1F06_001580) - 329477..329737 (-) 261 WP_003242360.1 accessory factor UbiK family protein -
  L1F06_RS01585 (L1F06_001585) glnK 330148..330486 (+) 339 WP_003096476.1 P-II family nitrogen regulator -
  L1F06_RS01590 (L1F06_001590) - 330816..332066 (+) 1251 WP_011920556.1 ammonium transporter -
  L1F06_RS01595 (L1F06_001595) - 332165..332590 (+) 426 WP_003242364.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  L1F06_RS01600 (L1F06_001600) sutA 332668..332991 (+) 324 WP_003242366.1 transcriptional regulator SutA -
  L1F06_RS01605 (L1F06_001605) - 333125..333826 (-) 702 WP_003242368.1 HAD-IA family hydrolase -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 52796.66 Da        Isoelectric Point: 7.7886

>NTDB_id=699466 L1F06_RS01575 WP_129482021.1 327949..329442(-) (comM) [Pseudomonas hydrolytica strain DSWY01]
MSLAIVHSRAQVGVEAPAVTVEAHLANGLPALTLVGLPETAVKESKDRVRSAILNAAFEFPNRRITLNLAPADLPKDGGR
FDLAIALGILAASGQVPAASLDEYECLGELALSGAVRPVQGVLPAALATRAAGRTLLVPAANAEEASLASGLKVIAVDHL
LQIAAHLNGSAPLAPYQAQGLLRQSLPYPDLAEVQGQLAAKRALLVAAAGSHNLLLSGPPGTGKTLLASRLPGLLPPLDE
SEALQVAAIHSVASHTPLQHWPQRPFRTPHHSASGPALVGGGSRPQPGEITLAHQGVLFLDELPEFDRKVLEVLREPLES
GHIVIARARDKVRFPARFQLVAAMNPCPCGYLGDASNRCRCTPEQIQRYRAKLSGPLLDRIDLHLTVARESTALEVPAQD
GESTAEAAAKVARARELQLQRQGVANAFLDLPGLRQHCALSETDRHWLENACERLGLSLRAAHRVLKVARTLADLADERQ
IARTHLAEALQYRPGMG

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=699466 L1F06_RS01575 WP_129482021.1 327949..329442(-) (comM) [Pseudomonas hydrolytica strain DSWY01]
ATGTCCCTGGCCATCGTTCACAGCCGCGCCCAGGTCGGCGTCGAAGCCCCGGCCGTTACCGTCGAAGCGCACCTGGCCAA
CGGCCTGCCGGCACTGACCCTAGTCGGCCTGCCGGAAACCGCGGTCAAGGAAAGCAAGGACCGCGTGCGCAGCGCCATCC
TCAACGCCGCCTTCGAATTCCCCAATCGACGCATCACCCTCAACCTGGCCCCGGCGGATCTGCCGAAGGACGGCGGTCGC
TTCGATCTGGCGATCGCCCTGGGGATTCTTGCCGCCAGCGGCCAGGTGCCGGCAGCCAGCCTCGATGAATACGAATGCCT
GGGCGAACTGGCGCTGTCCGGCGCCGTGCGTCCGGTACAGGGCGTACTGCCGGCTGCACTGGCCACGCGCGCGGCCGGCC
GCACTCTCTTGGTGCCGGCGGCCAATGCCGAGGAAGCCAGCCTGGCCTCGGGCCTGAAGGTGATCGCCGTCGATCACCTG
CTGCAGATCGCCGCGCACCTCAACGGCAGCGCCCCGCTCGCGCCCTATCAGGCGCAGGGGCTGCTACGCCAGAGCCTGCC
ATACCCGGACCTCGCGGAAGTCCAGGGCCAGCTGGCGGCCAAGCGCGCCCTGCTGGTCGCCGCTGCCGGCTCGCACAACC
TGCTGCTCAGCGGCCCACCCGGCACCGGCAAGACGCTGCTGGCCAGCCGCCTGCCCGGCCTGCTGCCGCCGCTGGACGAA
AGCGAGGCACTGCAGGTCGCCGCGATCCATTCGGTGGCCAGCCATACGCCTTTGCAGCACTGGCCGCAGCGCCCCTTTCG
CACACCGCACCATAGCGCCTCGGGGCCGGCCCTGGTCGGCGGCGGCAGTCGCCCGCAGCCCGGCGAAATCACCCTGGCGC
ATCAGGGGGTGCTGTTCCTCGACGAGTTGCCCGAGTTCGACAGGAAGGTTCTGGAGGTGCTGCGCGAACCCTTGGAGAGC
GGCCATATCGTCATCGCCCGGGCCCGCGACAAGGTACGCTTTCCCGCGCGCTTTCAACTGGTGGCGGCGATGAACCCCTG
CCCCTGCGGCTACCTGGGCGATGCGAGCAACCGCTGCCGCTGCACCCCGGAGCAGATCCAGCGCTACCGCGCCAAGCTGT
CCGGACCGCTGCTCGACCGCATCGACCTGCACCTGACCGTGGCGCGCGAAAGCACGGCGCTGGAGGTGCCGGCGCAGGAT
GGCGAAAGCACCGCGGAGGCGGCGGCCAAGGTGGCGCGGGCGCGCGAGTTGCAGTTGCAGCGCCAGGGCGTGGCCAACGC
CTTTCTCGACCTGCCGGGGCTGCGCCAGCACTGCGCCCTGAGCGAGACGGATCGTCACTGGCTGGAAAATGCCTGCGAAC
GCCTCGGCCTGTCGCTGCGCGCCGCGCACCGGGTGCTCAAGGTGGCGCGCACCCTGGCCGACCTGGCCGACGAGCGGCAG
ATCGCACGCACGCATCTGGCCGAGGCGCTGCAGTACCGACCGGGGATGGGATGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.566

99.598

0.563
  comM Vibrio campbellii strain DS40M4

56.162

99.598

0.559
  comM Glaesserella parasuis strain SC1401

55.11

100

0.553
  comM Haemophilus influenzae Rd KW20

54.2

100

0.545
  comM Legionella pneumophila str. Paris

49.902

100

0.511
  comM Legionella pneumophila strain ERS1305867

49.902

100

0.511
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.23

100

0.469