Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NFJ61_RS22980 Genome accession   NZ_CP099386
Coordinates   4818945..4820465 (+) Length   506 a.a.
NCBI ID   WP_142418359.1    Uniprot ID   -
Organism   Citrobacter braakii strain RHB09-E4-C01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4813945..4825465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NFJ61_RS22960 (NFJ61_22940) - 4815500..4816429 (-) 930 WP_003829030.1 branched-chain amino acid transaminase -
  NFJ61_RS22965 (NFJ61_22945) ilvM 4816447..4816710 (-) 264 WP_003018017.1 acetolactate synthase 2 small subunit -
  NFJ61_RS22970 (NFJ61_22950) ilvG 4816707..4818353 (-) 1647 WP_279272577.1 acetolactate synthase 2 catalytic subunit -
  NFJ61_RS22975 (NFJ61_22955) ilvL 4818493..4818591 (-) 99 WP_001311244.1 ilv operon leader peptide -
  NFJ61_RS22980 (NFJ61_22960) comM 4818945..4820465 (+) 1521 WP_142418359.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NFJ61_RS22985 (NFJ61_22965) maoP 4820491..4820829 (-) 339 WP_003018025.1 macrodomain Ori organization protein MaoP -
  NFJ61_RS22990 (NFJ61_22970) hdfR 4820936..4821781 (+) 846 WP_087121878.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55204.21 Da        Isoelectric Point: 7.3092

>NTDB_id=699326 NFJ61_RS22980 WP_142418359.1 4818945..4820465(+) (comM) [Citrobacter braakii strain RHB09-E4-C01]
MSLSIVHTRAALGVNAPAITIEVHISNGLPGLTMVGLPETTVKEARDRVRSAIINSGYEFPTKKITINLAPADLPKEGGR
YDLPIAVALLAASEQLTPHNLDTYELVGELALTGALRGVPGAISSATEAIRAGRRIIVAKENAAEVGLIHGEGCLIADHL
QTVCAFLEGKHDLDRPSSADFTPNALADDLSDVIGQEQGKRGLELTAAGGHNLLLIGPPGTGKTMLASRLRGLLPPLSND
EALESAAILSLIHSDTIQKQWKQRPFRSPHHSASLTAMVGGGSIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLIAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSQSAMKG
ENSATVKQRVMAARERQYQRQNKLNAHLDSQDIHKYCLLRSDDAQWLEETLAHLGLSIRAWLRLIKVARTIADIEQCDHI
SRQHLQEAVGYRAIDRLLIHLQKLLT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=699326 NFJ61_RS22980 WP_142418359.1 4818945..4820465(+) (comM) [Citrobacter braakii strain RHB09-E4-C01]
ATGTCACTATCGATTGTTCACACACGCGCCGCGCTAGGCGTGAATGCGCCAGCCATTACCATCGAGGTACATATCAGCAA
CGGCCTGCCTGGTTTAACCATGGTGGGGCTGCCCGAAACGACGGTGAAAGAGGCTCGCGATCGGGTACGCAGTGCGATTA
TTAATAGCGGTTATGAATTCCCGACAAAGAAGATAACTATAAACCTCGCTCCGGCCGATCTCCCGAAAGAAGGGGGGCGA
TATGATTTACCTATCGCTGTTGCGCTTCTGGCCGCTTCTGAGCAGCTTACACCCCACAATCTCGACACCTACGAGCTGGT
AGGTGAATTAGCGCTTACAGGCGCGCTACGCGGCGTTCCCGGCGCGATATCAAGCGCAACCGAGGCCATTCGTGCAGGCA
GGCGAATTATTGTCGCAAAAGAGAATGCCGCTGAAGTTGGACTGATACACGGCGAAGGGTGCCTGATCGCCGATCACCTG
CAGACCGTATGCGCATTTCTCGAAGGTAAGCATGATTTAGACAGGCCATCATCCGCAGATTTTACGCCTAACGCATTAGC
TGATGATCTGAGCGATGTTATCGGCCAGGAACAGGGTAAACGCGGGCTGGAGCTTACCGCAGCAGGCGGCCACAACCTCT
TGCTCATCGGCCCGCCGGGTACGGGAAAGACTATGCTAGCCAGTCGACTCAGAGGGCTGCTCCCTCCACTTAGCAACGAT
GAAGCGCTGGAAAGTGCCGCGATACTCAGTCTGATCCATTCCGACACGATACAAAAACAGTGGAAGCAACGCCCTTTTCG
CTCGCCACATCACAGTGCTTCATTAACCGCCATGGTCGGTGGAGGCTCTATTCCTGCGCCAGGAGAGATCTCTTTAGCGC
ACAACGGCATACTGTTTCTGGATGAACTACCCGAGTTTGAGCGGCGCACGCTGGATGCACTGCGCGAACCCATCGAGTCC
GGGCAGATCCATCTATCCCGCACCAGAGCAAAAATAACCTATCCCGCACGCTTTCAACTCATAGCTGCGATGAATCCAAG
CCCGACGGGCCATTATCAGGGAAACCATAACCGCTGTACCCCAGAACAGACACTGCGCTACCTAAATCGATTGTCAGGTC
CATTTCTTGACCGCTTCGACCTCTCCCTCGAAATTCCCTTACCGCCGCCCGGTATACTCAGCCAGAGCGCGATGAAAGGG
GAAAATAGCGCAACGGTGAAGCAACGTGTTATGGCAGCGCGAGAGCGTCAGTATCAGCGGCAAAATAAGTTAAACGCACA
TCTGGACAGTCAGGATATCCATAAATACTGCCTACTGCGTAGCGACGATGCACAGTGGCTTGAAGAAACGCTCGCTCATC
TCGGATTGTCTATCCGCGCCTGGCTGCGCCTGATTAAGGTCGCTCGAACGATTGCGGATATCGAACAATGTGATCACATC
TCTCGCCAGCATTTACAGGAGGCCGTTGGGTACCGAGCGATAGACAGGTTACTCATTCATCTGCAGAAACTACTGACATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

58.367

99.209

0.579
  comM Haemophilus influenzae Rd KW20

57.339

100

0.579
  comM Glaesserella parasuis strain SC1401

57.171

100

0.575
  comM Vibrio campbellii strain DS40M4

57.54

99.605

0.573
  comM Legionella pneumophila str. Paris

47.284

98.221

0.464
  comM Legionella pneumophila strain ERS1305867

47.284

98.221

0.464
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.857

99.605

0.427