Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NFJ84_RS23915 Genome accession   NZ_CP099381
Coordinates   4981641..4983161 (+) Length   506 a.a.
NCBI ID   WP_204566433.1    Uniprot ID   -
Organism   Citrobacter braakii strain RHB16-E2-C02     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4976641..4988161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NFJ84_RS23895 (NFJ84_23880) - 4978197..4979126 (-) 930 WP_003829030.1 branched-chain amino acid transaminase -
  NFJ84_RS23900 (NFJ84_23885) ilvM 4979144..4979407 (-) 264 WP_003018017.1 acetolactate synthase 2 small subunit -
  NFJ84_RS23905 (NFJ84_23890) ilvG 4979404..4981050 (-) 1647 WP_279265400.1 acetolactate synthase 2 catalytic subunit -
  NFJ84_RS23910 (NFJ84_23895) ilvL 4981190..4981288 (-) 99 WP_001311244.1 ilv operon leader peptide -
  NFJ84_RS23915 (NFJ84_23900) comM 4981641..4983161 (+) 1521 WP_204566433.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NFJ84_RS23920 (NFJ84_23905) maoP 4983186..4983524 (-) 339 WP_003018025.1 macrodomain Ori organization protein MaoP -
  NFJ84_RS23925 (NFJ84_23910) hdfR 4983631..4984476 (+) 846 WP_094761725.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55151.14 Da        Isoelectric Point: 7.2884

>NTDB_id=699236 NFJ84_RS23915 WP_204566433.1 4981641..4983161(+) (comM) [Citrobacter braakii strain RHB16-E2-C02]
MSLSIVHTRAALGVNAPAITIEVHISNGLPGLTMVGLPETTVKEARDRVRSAIINSGYEFPAKKITINLAPADLPKEGGR
YDLPIAVALLAASEQLTPNNLDTYELVGELALTGALRGVPGAISSATEAIRAGRRIIVAKENAAEVGLIHGEGCLIADHL
QTVCAFLEGKHDLDRPSSADFTPNALADDLSDVIGQEQGKRGLELTAAGGHNLLLIGPPGTGKTMLASRLRGLLPPLSND
EALESAAILSLIHSDTIQKQWKQRPFRSPHHSASLTAMVGGGSIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLIAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSQSAMKG
ENSATVKQRVMAARERQYQRQNKLNAHLDSQDIHKYCLLRSDDAQWLEETLAHLGLSIRAWLRLIKVARTIADIEQCDHI
SRQHLQEAVGYRAIDRLLIHLQKLLT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=699236 NFJ84_RS23915 WP_204566433.1 4981641..4983161(+) (comM) [Citrobacter braakii strain RHB16-E2-C02]
ATGTCACTATCGATTGTTCACACACGCGCCGCGCTAGGCGTGAATGCGCCAGCCATTACCATCGAGGTACATATCAGCAA
CGGCCTGCCTGGTTTAACCATGGTGGGGCTGCCCGAAACGACGGTGAAAGAGGCTCGCGATCGGGTACGCAGTGCGATTA
TTAATAGCGGTTATGAATTCCCGGCAAAGAAGATAACTATAAACCTCGCTCCGGCCGATCTCCCGAAAGAAGGGGGGCGA
TATGATTTACCTATCGCTGTTGCGCTTCTGGCCGCTTCTGAGCAGCTTACACCCAACAATCTCGACACCTACGAGCTAGT
AGGTGAATTAGCGCTTACAGGCGCGCTACGCGGCGTTCCCGGCGCGATATCAAGCGCAACCGAGGCCATTCGTGCAGGCA
GGCGAATTATTGTCGCAAAAGAGAATGCCGCTGAAGTTGGACTGATACACGGCGAAGGGTGCCTGATCGCCGATCACCTG
CAGACCGTATGCGCATTTCTCGAAGGTAAGCATGATTTAGACAGGCCATCATCCGCAGATTTTACGCCTAACGCATTAGC
TGATGATCTGAGCGATGTTATCGGCCAGGAACAGGGTAAACGCGGGCTGGAGCTTACAGCAGCAGGCGGCCACAACCTCT
TGCTCATCGGCCCGCCTGGTACGGGAAAGACTATGCTAGCCAGTCGACTCAGAGGGCTGCTCCCTCCACTTAGCAACGAT
GAAGCGCTGGAAAGTGCCGCGATACTCAGTCTGATCCATTCCGACACGATACAAAAACAGTGGAAGCAACGCCCTTTTCG
CTCGCCACATCACAGTGCTTCATTAACCGCCATGGTCGGTGGAGGCTCTATTCCTGCGCCAGGAGAGATCTCTTTAGCGC
ACAACGGCATACTGTTTCTGGATGAACTACCCGAGTTTGAGCGGCGCACGCTGGATGCACTGCGCGAACCCATCGAGTCC
GGGCAGATCCATCTATCTCGCACCAGAGCAAAAATAACCTATCCCGCACGCTTTCAACTCATAGCTGCGATGAATCCAAG
CCCGACGGGCCATTATCAGGGGAACCATAACCGCTGTACCCCAGAACAGACGCTGCGCTACCTAAATCGATTGTCAGGTC
CATTTCTTGACCGCTTCGACCTCTCCCTCGAAATTCCCTTACCGCCGCCCGGTATACTCAGCCAGAGCGCGATGAAAGGG
GAAAATAGCGCAACGGTGAAGCAACGTGTTATGGCAGCGCGAGAGCGTCAGTATCAGCGGCAAAATAAGTTAAACGCACA
TCTGGACAGTCAGGATATCCATAAATACTGCCTACTGCGTAGCGACGATGCACAGTGGCTTGAAGAAACGCTCGCTCATC
TCGGATTGTCTATCCGCGCCTGGCTGCGCCTGATTAAGGTCGCTCGAACGATTGCGGATATCGAACAATGTGATCACATC
TCTCGCCAACATTTACAGGAGGCCGTTGGGTACCGAGCGATAGACAGGTTACTCATTCATCTGCAGAAACTACTGACATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

58.765

99.209

0.583
  comM Haemophilus influenzae Rd KW20

57.534

100

0.581
  comM Glaesserella parasuis strain SC1401

57.367

100

0.577
  comM Vibrio campbellii strain DS40M4

57.738

99.605

0.575
  comM Legionella pneumophila str. Paris

47.284

98.221

0.464
  comM Legionella pneumophila strain ERS1305867

47.284

98.221

0.464
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.857

99.605

0.427