Detailed information
Bioinformatically predicted
Overview
| Name | pilE | Type | Machinery gene |
| Locus tag | PCP33_RS27920 | Genome accession | NZ_CP115252 |
| Coordinates | 6054694..6055233 (-) | Length | 179 a.a. |
| NCBI ID | WP_003116248.1 | Uniprot ID | Q59651 |
| Organism | Pseudomonas aeruginosa strain F034 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 6049694..6060233
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PCP33_RS27900 (PCP33_27905) | - | 6050378..6052633 (-) | 2256 | WP_003104913.1 | DUF1631 domain-containing protein | - |
| PCP33_RS27905 (PCP33_27910) | nadC | 6052919..6053767 (+) | 849 | WP_016562338.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| PCP33_RS27915 (PCP33_27920) | - | 6053932..6054630 (-) | 699 | WP_023122772.1 | hypothetical protein | - |
| PCP33_RS27920 (PCP33_27925) | pilE | 6054694..6055233 (-) | 540 | WP_003116248.1 | pilin | Machinery gene |
| PCP33_RS27925 (PCP33_27930) | pilB | 6055462..6057165 (+) | 1704 | WP_003116249.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| PCP33_RS27930 (PCP33_27935) | pilC | 6057169..6058386 (+) | 1218 | WP_003116250.1 | type II secretion system F family protein | Machinery gene |
| PCP33_RS27935 (PCP33_27940) | pilD | 6058389..6059261 (+) | 873 | WP_016562340.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| PCP33_RS27940 (PCP33_27945) | coaE | 6059258..6059869 (+) | 612 | WP_003094654.1 | dephospho-CoA kinase | - |
| PCP33_RS27945 (PCP33_27950) | yacG | 6059866..6060066 (+) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
Sequence
Protein
Download Length: 179 a.a. Molecular weight: 18003.27 Da Isoelectric Point: 4.6894
>NTDB_id=699177 PCP33_RS27920 WP_003116248.1 6054694..6055233(-) (pilE) [Pseudomonas aeruginosa strain F034]
MTAQKGFTLIELMIVVAIIGILAAVALPAYQDYTIRARVTEGVGLAASAKTLIGDSSATAGELAASARVWNAQAGNAGAT
SKYVTSVQIAEATGEITVTFNAANVGNIPANSTLVFTPYVQNAAGAPTQLGASYASGVTGSIDWGCASDSNAVSSGTDRN
MPALTAGTLPARFAPSECR
MTAQKGFTLIELMIVVAIIGILAAVALPAYQDYTIRARVTEGVGLAASAKTLIGDSSATAGELAASARVWNAQAGNAGAT
SKYVTSVQIAEATGEITVTFNAANVGNIPANSTLVFTPYVQNAAGAPTQLGASYASGVTGSIDWGCASDSNAVSSGTDRN
MPALTAGTLPARFAPSECR
Nucleotide
Download Length: 540 bp
>NTDB_id=699177 PCP33_RS27920 WP_003116248.1 6054694..6055233(-) (pilE) [Pseudomonas aeruginosa strain F034]
ATGACAGCTCAGAAAGGCTTTACCTTGATCGAACTGATGATCGTGGTTGCGATCATCGGTATTCTTGCTGCCGTCGCTTT
GCCGGCATATCAGGATTACACCATTCGTGCTCGCGTGACAGAGGGGGTTGGCTTGGCTGCCAGCGCCAAGACGCTTATTG
GCGATAGCTCTGCCACTGCCGGTGAGCTAGCCGCTTCGGCAAGGGTCTGGAATGCTCAAGCCGGTAACGCCGGTGCTACC
AGTAAGTATGTGACCTCTGTACAAATTGCAGAGGCGACTGGTGAAATCACTGTTACTTTCAATGCCGCAAACGTGGGTAA
TATTCCGGCTAACTCTACCCTGGTATTTACTCCCTATGTGCAGAATGCTGCCGGTGCCCCGACTCAATTGGGTGCCAGTT
ATGCTTCCGGTGTGACTGGCTCTATTGACTGGGGTTGTGCATCGGACTCCAACGCGGTTTCCAGTGGTACCGACCGCAAT
ATGCCTGCCCTGACTGCAGGTACCCTGCCGGCTCGTTTCGCTCCTAGCGAATGCCGCTAA
ATGACAGCTCAGAAAGGCTTTACCTTGATCGAACTGATGATCGTGGTTGCGATCATCGGTATTCTTGCTGCCGTCGCTTT
GCCGGCATATCAGGATTACACCATTCGTGCTCGCGTGACAGAGGGGGTTGGCTTGGCTGCCAGCGCCAAGACGCTTATTG
GCGATAGCTCTGCCACTGCCGGTGAGCTAGCCGCTTCGGCAAGGGTCTGGAATGCTCAAGCCGGTAACGCCGGTGCTACC
AGTAAGTATGTGACCTCTGTACAAATTGCAGAGGCGACTGGTGAAATCACTGTTACTTTCAATGCCGCAAACGTGGGTAA
TATTCCGGCTAACTCTACCCTGGTATTTACTCCCTATGTGCAGAATGCTGCCGGTGCCCCGACTCAATTGGGTGCCAGTT
ATGCTTCCGGTGTGACTGGCTCTATTGACTGGGGTTGTGCATCGGACTCCAACGCGGTTTCCAGTGGTACCGACCGCAAT
ATGCCTGCCCTGACTGCAGGTACCCTGCCGGCTCGTTTCGCTCCTAGCGAATGCCGCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilE | Neisseria elongata subsp. glycolytica ATCC 29315 |
41.451 |
100 |
0.447 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
44.444 |
100 |
0.447 |
| pilA2 | Legionella pneumophila str. Paris |
42.373 |
98.883 |
0.419 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
41.808 |
98.883 |
0.413 |
| comP | Acinetobacter baylyi ADP1 |
38.889 |
100 |
0.391 |