Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NFK58_RS25010 Genome accession   NZ_CP099373
Coordinates   5203676..5205196 (+) Length   506 a.a.
NCBI ID   WP_123269207.1    Uniprot ID   -
Organism   Citrobacter portucalensis strain RHB38-SO-C05     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5198676..5210196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NFK58_RS24990 (NFK58_25010) - 5200232..5201161 (-) 930 WP_003018014.1 branched-chain amino acid transaminase -
  NFK58_RS24995 (NFK58_25015) ilvM 5201179..5201442 (-) 264 WP_003018017.1 acetolactate synthase 2 small subunit -
  NFK58_RS25000 (NFK58_25020) ilvG 5201439..5203085 (-) 1647 WP_003829032.1 acetolactate synthase 2 catalytic subunit -
  NFK58_RS25005 (NFK58_25025) ilvL 5203225..5203323 (-) 99 WP_001311244.1 ilv operon leader peptide -
  NFK58_RS25010 (NFK58_25030) comM 5203676..5205196 (+) 1521 WP_123269207.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NFK58_RS25015 (NFK58_25035) maoP 5205221..5205559 (-) 339 WP_003018025.1 macrodomain Ori organization protein MaoP -
  NFK58_RS25020 (NFK58_25040) hdfR 5205666..5206511 (+) 846 WP_095533172.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55121.07 Da        Isoelectric Point: 7.1474

>NTDB_id=699078 NFK58_RS25010 WP_123269207.1 5203676..5205196(+) (comM) [Citrobacter portucalensis strain RHB38-SO-C05]
MSLSIVHTRAALGVNAPAITIEVHISNGLPGLTMVGLPETTVKEARDRVRSAIINSGYEFPAKKITINLAPADLPKEGGR
YDLPIAVALLAASEQLTTHNLDTYELVGELALTGALRGVPGAISSATEAIRAGRRIIVAKENAAEVGLIHGEGCLIADHL
QAVCAFLEGKHDLDRPSSADFTPCAIADDLSDVIGQEQGKRGLELTAAGGHNLLLIGPPGTGKTMLASRLRGLLPPLSND
EALESAAILSLVNSDMLQKQWKQRPFRSPHHSASLTAMVGGGSIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLIAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSQNQVKG
EDSATVKQRVMAARERQYQRQNKLNAHLDSQDIHKYCPLRSDDAQWLEETLAHLGLSIRAWLRLIKVARTIADIEQSDHI
SRQHLQEAVGYRAIDRLLIHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=699078 NFK58_RS25010 WP_123269207.1 5203676..5205196(+) (comM) [Citrobacter portucalensis strain RHB38-SO-C05]
ATGTCACTATCGATTGTTCACACACGCGCTGCGCTGGGCGTGAATGCGCCAGCCATTACCATCGAGGTACATATCAGCAA
TGGTTTGCCTGGTTTAACCATGGTGGGATTACCCGAAACAACGGTAAAAGAGGCCCGCGATCGGGTTCGCAGTGCGATTA
TTAATAGCGGTTATGAATTCCCGGCAAAGAAGATAACCATAAACCTCGCTCCAGCCGATCTCCCGAAAGAAGGGGGACGA
TATGATTTACCTATCGCAGTTGCGCTTCTGGCCGCTTCTGAGCAGCTTACTACCCATAATCTCGATACATATGAGCTGGT
AGGCGAATTAGCGCTTACAGGCGCGTTACGCGGCGTTCCCGGTGCGATATCAAGTGCAACCGAAGCCATTCGCGCAGGCA
GGAGAATTATTGTCGCAAAAGAGAATGCAGCTGAAGTGGGACTGATACACGGTGAAGGGTGCCTGATAGCCGATCACCTA
CAGGCCGTATGTGCATTCCTCGAAGGTAAGCATGATTTAGACAGACCATCATCGGCAGATTTTACCCCCTGCGCAATAGC
AGATGATCTGAGCGATGTTATCGGCCAGGAACAGGGTAAACGCGGGCTGGAGCTTACCGCAGCTGGCGGTCATAACCTCT
TACTCATCGGCCCTCCAGGTACGGGTAAGACCATGCTGGCCAGTCGCCTGAGAGGATTGCTTCCGCCACTGAGTAACGAT
GAGGCACTGGAAAGCGCCGCGATTCTTAGTCTGGTCAATTCCGACATGCTACAAAAACAGTGGAAGCAACGCCCTTTTCG
TTCGCCGCATCACAGTGCTTCATTAACCGCCATGGTCGGTGGAGGCTCTATTCCTGCGCCAGGAGAGATCTCTCTGGCGC
ATAACGGCATACTGTTTCTGGATGAACTCCCCGAGTTTGAGCGGCGCACACTGGATGCACTGCGAGAGCCCATTGAGTCC
GGGCAGATTCATTTATCCCGCACTCGGGCAAAAATAACTTACCCCGCACGTTTTCAGCTTATTGCTGCCATGAATCCCAG
CCCAACAGGACATTATCAGGGGAACCATAACCGCTGTACCCCAGAGCAGACGCTACGCTACCTCAATCGATTATCAGGTC
CATTTCTTGACCGCTTCGATCTCTCCCTCGAAATCCCCTTACCGCCGCCCGGCATCCTCAGCCAGAACCAGGTAAAAGGG
GAAGATAGCGCAACGGTGAAACAACGCGTTATGGCAGCACGAGAGCGTCAGTATCAGCGGCAGAATAAGTTAAATGCGCA
TCTGGACAGCCAGGATATCCATAAATACTGTCCACTGCGTAGCGATGATGCGCAGTGGCTTGAAGAAACGCTGGCGCATC
TCGGATTATCCATCCGCGCCTGGTTACGCCTGATAAAGGTCGCTCGAACGATCGCGGATATAGAGCAATCTGACCATATC
TCTCGCCAGCACTTACAGGAGGCTGTTGGGTATCGGGCGATAGACAGATTACTCATTCATTTACAGAAACTACTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

58.765

99.209

0.583
  comM Glaesserella parasuis strain SC1401

57.874

100

0.581
  comM Vibrio campbellii strain DS40M4

58.333

99.605

0.581
  comM Haemophilus influenzae Rd KW20

57.451

100

0.579
  comM Legionella pneumophila str. Paris

47.485

98.221

0.466
  comM Legionella pneumophila strain ERS1305867

47.485

98.221

0.466
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.659

99.605

0.425