Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NFL11_RS21985 Genome accession   NZ_CP099364
Coordinates   4503125..4503649 (-) Length   174 a.a.
NCBI ID   WP_279268301.1    Uniprot ID   -
Organism   Citrobacter braakii strain RHB44-SE-C08     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4498125..4508649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NFL11_RS21965 (NFL11_21955) soxR 4499768..4500226 (-) 459 WP_016155363.1 redox-sensitive transcriptional activator SoxR -
  NFL11_RS21970 (NFL11_21960) soxS 4500313..4500636 (+) 324 WP_016155362.1 superoxide response transcriptional regulator SoxS -
  NFL11_RS21975 (NFL11_21965) - 4500639..4502225 (-) 1587 WP_279268300.1 EAL domain-containing protein -
  NFL11_RS21980 (NFL11_21970) - 4502777..4503058 (+) 282 WP_016155360.1 YjcB family protein -
  NFL11_RS21985 (NFL11_21975) ssb 4503125..4503649 (-) 525 WP_279268301.1 single-stranded DNA-binding protein SSB1 Machinery gene
  NFL11_RS21990 (NFL11_21980) uvrA 4503901..4506723 (+) 2823 WP_016155358.1 excinuclease ABC subunit UvrA -
  NFL11_RS21995 (NFL11_21985) - 4506818..4507174 (-) 357 WP_016155357.1 MmcQ/YjbR family DNA-binding protein -
  NFL11_RS22000 (NFL11_21990) aphA 4507301..4508014 (-) 714 WP_003826615.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18621.66 Da        Isoelectric Point: 5.2456

>NTDB_id=698983 NFL11_RS21985 WP_279268301.1 4503125..4503649(-) (ssb) [Citrobacter braakii strain RHB44-SE-C08]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=698983 NFL11_RS21985 WP_279268301.1 4503125..4503649(-) (ssb) [Citrobacter braakii strain RHB44-SE-C08]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAAATGAAAGAGCAGACTG
AATGGCACCGTGTGGTGCTGTTCGGCAAACTGGCGGAAGTTGCCAGCGAATATCTGCGTAAAGGTTCCCAGGTCTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGCGTAGAAAAGTACACCACTGAAGTTGTGGTTAACGTTGG
CGGCACCATGCAAATGCTGGGCGGTCGTCAGGGTGGTGGGGCTCCGGCAGGTGGCGGCCAGCAGGGTGGTTGGGGTCAGC
CTCAGCAGCCGCAAGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGCAGTCGGCTCCGGCAGCGCCG
TCTAATGAGCCGCCGATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.586

100

0.776
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.609
  ssb Neisseria meningitidis MC58

47.253

100

0.494
  ssb Neisseria gonorrhoeae MS11

47.253

100

0.494
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.374