Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NFL40_RS20075 Genome accession   NZ_CP099323
Coordinates   4227613..4228137 (-) Length   174 a.a.
NCBI ID   WP_003860284.1    Uniprot ID   A0A9Q2WCG9
Organism   Enterobacter hormaechei strain RHB45-SO-C08     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4222613..4233137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NFL40_RS20050 (NFL40_20040) soxR 4222717..4223175 (-) 459 WP_003860275.1 redox-sensitive transcriptional activator SoxR -
  NFL40_RS20055 (NFL40_20045) soxS 4223274..4223600 (+) 327 WP_003860277.1 superoxide response transcriptional regulator SoxS -
  NFL40_RS20060 (NFL40_20050) - 4223607..4225172 (-) 1566 WP_048966214.1 EAL domain-containing protein -
  NFL40_RS20065 (NFL40_20055) - 4225438..4226838 (-) 1401 WP_048966215.1 sensor domain-containing diguanylate cyclase -
  NFL40_RS20070 (NFL40_20060) - 4227270..4227551 (+) 282 WP_022646751.1 YjcB family protein -
  NFL40_RS20075 (NFL40_20065) ssb 4227613..4228137 (-) 525 WP_003860284.1 single-stranded DNA-binding protein SSB1 Machinery gene
  NFL40_RS20080 (NFL40_20070) uvrA 4228389..4231211 (+) 2823 WP_003860287.1 excinuclease ABC subunit UvrA -
  NFL40_RS20085 (NFL40_20075) - 4231215..4231568 (-) 354 WP_006810472.1 MmcQ/YjbR family DNA-binding protein -
  NFL40_RS20090 (NFL40_20080) - 4231571..4231987 (-) 417 WP_023299095.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  NFL40_RS20095 (NFL40_20085) aphA 4232099..4232812 (-) 714 WP_048966216.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18650.66 Da        Isoelectric Point: 5.2456

>NTDB_id=698761 NFL40_RS20075 WP_003860284.1 4227613..4228137(-) (ssb) [Enterobacter hormaechei strain RHB45-SO-C08]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=698761 NFL40_RS20075 WP_003860284.1 4227613..4228137(-) (ssb) [Enterobacter hormaechei strain RHB45-SO-C08]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCTGAAGTGGCCGGTGAGTATCTGCGTAAGGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGAAAAATACACCACGGAAGTGGTGGTCAACGTAGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGCGGTGGCGCACCGGCAGGTGGCGGCCAGCAGCAGGGCGGTTGGGGTC
AGCCTCAGCAGCCTCAGGGCGGCAATCAGTTTAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGTCTGCTCCGGCACCG
TCTAACGAACCGCCAATGGACTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.667

100

0.793
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.609
  ssb Neisseria meningitidis MC58

47.191

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.191

100

0.483
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.374