Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   PCP21_RS23335 Genome accession   NZ_CP115247
Coordinates   4994527..4994856 (+) Length   109 a.a.
NCBI ID   WP_023084085.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain F039     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4989527..4999856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP21_RS23320 (PCP21_23310) - 4990142..4991104 (+) 963 WP_016253165.1 UDP-glucose 4-epimerase family protein -
  PCP21_RS23325 (PCP21_23315) - 4991104..4992141 (+) 1038 WP_003452706.1 MraY family glycosyltransferase -
  PCP21_RS23330 (PCP21_23320) - 4992339..4994336 (+) 1998 WP_003122257.1 polysaccharide biosynthesis protein -
  PCP21_RS23335 (PCP21_23325) comEA/comE1 4994527..4994856 (+) 330 WP_023084085.1 ComEA family DNA-binding protein Machinery gene
  PCP21_RS23345 (PCP21_23335) - 4995073..4996269 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  PCP21_RS23350 (PCP21_23340) uvrB 4996457..4998469 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11339.25 Da        Isoelectric Point: 8.0459

>NTDB_id=698656 PCP21_RS23335 WP_023084085.1 4994527..4994856(+) (comEA/comE1) [Pseudomonas aeruginosa strain F039]
MHLIKSALLLILFACLPFSASAAPAAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=698656 PCP21_RS23335 WP_023084085.1 4994527..4994856(+) (comEA/comE1) [Pseudomonas aeruginosa strain F039]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGCCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGATG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385
  comEA Vibrio cholerae C6706

38.182

100

0.385
  comEA Vibrio cholerae strain A1552

38.182

100

0.385