Detailed information NTG0698651

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PCP21_RS20960
• Genome accession: NZ_CP115247
• Coordinates: 4481402..4482406 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain F039
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4476402..4487406

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PCP21_RS20930 (PCP21_20925)	fghA	4476494..4477345 (+)	852	WP_023115121.1	S-formylglutathione hydrolase	-
PCP21_RS20935 (PCP21_20930)	ispF	4477416..4477889 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PCP21_RS20940 (PCP21_20935)	truD	4477886..4478953 (+)	1068	WP_023115122.1	tRNA pseudouridine(13) synthase TruD	-
PCP21_RS20945 (PCP21_20940)	surE	4478941..4479690 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PCP21_RS20950 (PCP21_20945)	-	4479723..4480358 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PCP21_RS20955 (PCP21_20950)	-	4480404..4481297 (+)	894	WP_003143263.1	peptidoglycan DD-metalloendopeptidase family protein	-
PCP21_RS20960 (PCP21_20955)	rpoS	4481402..4482406 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PCP21_RS20965 (PCP21_20960)	fdxA	4482833..4483156 (-)	324	WP_003092272.1	ferredoxin FdxA	-
PCP21_RS20970 (PCP21_20965)	mutS	4483223..4485790 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
PCP21_RS20975 (PCP21_20970)	-	4485916..4486923 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=698651 PCP21_RS20960 WP_003113871.1 4481402..4482406(+) (rpoS) [Pseudomonas aeruginosa strain F039]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=698651 PCP21_RS20960 WP_003113871.1 4481402..4482406(+) (rpoS) [Pseudomonas aeruginosa strain F039]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGTCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653