Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NFK33_RS21620 Genome accession   NZ_CP099310
Coordinates   4524558..4526078 (+) Length   506 a.a.
NCBI ID   WP_279256515.1    Uniprot ID   -
Organism   Enterobacter ludwigii strain RHB28-E3-C01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4519558..4531078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NFK33_RS21595 (NFK33_21595) ilvE 4521126..4522055 (-) 930 WP_279256513.1 branched-chain-amino-acid transaminase -
  NFK33_RS21600 (NFK33_21600) ilvM 4522074..4522337 (-) 264 WP_014172166.1 acetolactate synthase 2 small subunit -
  NFK33_RS21605 (NFK33_21605) ilvG 4522337..4523980 (-) 1644 WP_279256514.1 acetolactate synthase 2 catalytic subunit -
  NFK33_RS21610 (NFK33_21610) ilvX 4523983..4524033 (-) 51 WP_102046757.1 peptide IlvX -
  NFK33_RS21615 (NFK33_21615) ilvL 4524120..4524218 (-) 99 WP_001311244.1 ilv operon leader peptide -
  NFK33_RS21620 (NFK33_21620) comM 4524558..4526078 (+) 1521 WP_279256515.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NFK33_RS21625 (NFK33_21625) - 4526106..4526444 (-) 339 WP_014172168.1 DUF413 domain-containing protein -
  NFK33_RS21630 (NFK33_21630) hdfR 4526563..4527384 (+) 822 WP_014172169.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55018.00 Da        Isoelectric Point: 7.3481

>NTDB_id=698651 NFK33_RS21620 WP_279256515.1 4524558..4526078(+) (comM) [Enterobacter ludwigii strain RHB28-E3-C01]
MSLSVVYTRAAIGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNSSRLGAYEFIGELALTGALRGVSGAISGALEAIRAGRQIIVANENGAEVSLIAERGCLLAGHL
QEVCAYLEGQHVLSEPEESGDPLAESPDDLSDIYGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLNGLLPPLNNH
EALESAAIFSLVSSVSLQKQWRRRPFRSPHHSASLAAMVGGGTIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRARAKISYPARFQLVAAMNPSPSGHYQGNHNRSTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLSQSSARG
ESTVEVRERVIAAQARQYMRQHKLNARLDNAEIRQFCPLKTEDSCWLEDTLTRFGLSIRAWQRLIKVARTIADVEKCPDI
ERRHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=698651 NFK33_RS21620 WP_279256515.1 4524558..4526078(+) (comM) [Enterobacter ludwigii strain RHB28-E3-C01]
ATGTCACTGTCAGTTGTTTATACCCGTGCGGCCATTGGAGTAAAAGCACCGCTTATTTCGGTAGAAGTTCATCTCAGCAA
CGGGCTGCCCGGGCTGACGCTGGTTGGATTGCCGGAGACCACGGTAAAGGAAGCCAGAGATCGGGTGCGCAGTGCGATTA
TTAATAGCGGTTATACCTTTCCGGCAAAGAAAATCACCATCAACCTTGCGCCTGCAGACTTGCCTAAAGAGGGAGGGCGA
TATGATTTACCTATCGCTATAGCGCTCCTCGCCGCCTCTGAGCAGCTTAACAGCAGCAGACTAGGCGCATATGAGTTCAT
CGGTGAACTGGCGCTCACAGGCGCGCTGAGGGGCGTTTCTGGTGCCATCTCGGGTGCGCTGGAGGCCATTCGCGCAGGTC
GACAAATCATTGTTGCCAATGAAAATGGTGCAGAAGTGAGCCTGATAGCCGAGAGAGGATGTCTGCTAGCCGGGCATTTA
CAGGAAGTGTGCGCGTATCTTGAGGGGCAACATGTGCTGTCAGAGCCGGAAGAATCAGGCGATCCCCTGGCAGAAAGCCC
GGACGATCTGAGCGATATTTACGGCCAGGAGCAGGGTAAGCGGGCGCTGGAGATCACCGCTGCCGGCGGACATAACCTGT
TGCTGATTGGCCCACCGGGTACAGGAAAAACGATGCTGGCGAGCAGGTTGAATGGTTTACTGCCTCCACTTAATAACCAT
GAAGCGCTGGAAAGCGCGGCGATATTTAGTCTGGTGAGTTCAGTGTCATTGCAAAAACAGTGGCGACGTCGCCCGTTTCG
CTCTCCGCACCACAGTGCCTCACTGGCGGCCATGGTCGGCGGTGGCACCATACCAGGGCCGGGAGAGATCTCTCTGGCGC
ACAACGGCATCCTGTTTCTGGATGAACTGCCTGAATTTGAACGCCGCGTTCTGGATGCGCTGAGGGAGCCCATCGAATCG
GGTGAGATCCATATCTCCCGTGCACGCGCCAAAATAAGCTATCCCGCGCGGTTCCAGCTGGTAGCGGCAATGAACCCCAG
CCCATCGGGCCATTATCAGGGAAACCACAATCGCTCCACGCCTGAACAGACGCTGCGCTACCTGGGGAAGTTATCTGGTC
CTTTCCTGGATCGTTTCGATTTGTCGCTGGAAATCCCCTTGCCTCCTCCCGGCCTGCTCAGCCAGAGCAGCGCCAGAGGA
GAGAGTACGGTGGAGGTTCGCGAGCGGGTTATCGCCGCGCAGGCCCGGCAGTATATGCGTCAACATAAGCTGAATGCCCG
TCTGGATAACGCTGAGATTCGGCAGTTTTGTCCTCTTAAGACTGAAGATTCATGCTGGCTGGAGGATACGTTGACGCGCT
TTGGACTTTCCATTCGCGCATGGCAGCGTCTTATAAAAGTCGCCCGCACCATCGCCGATGTGGAAAAGTGCCCTGACATT
GAGAGGCGGCATCTGCAGGAAGCGTTAAGCTATCGTGCGATCGATCGCTTGCTCCTGCACCTGCAAAAGTTACTGGCATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

60.359

99.209

0.599
  comM Vibrio campbellii strain DS40M4

59.722

99.605

0.595
  comM Glaesserella parasuis strain SC1401

58.383

100

0.585
  comM Haemophilus influenzae Rd KW20

57.957

100

0.583
  comM Legionella pneumophila str. Paris

49.899

98.221

0.49
  comM Legionella pneumophila strain ERS1305867

49.899

98.221

0.49
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.787

100

0.439