Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NFJ20_RS24255 Genome accession   NZ_CP099298
Coordinates   5042299..5043819 (+) Length   506 a.a.
NCBI ID   WP_279274170.1    Uniprot ID   -
Organism   Citrobacter freundii strain RHB02-E3-C01     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5037299..5048819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NFJ20_RS24235 (NFJ20_24215) ilvE 5038855..5039784 (-) 930 WP_279274168.1 branched-chain-amino-acid transaminase -
  NFJ20_RS24240 (NFJ20_24220) ilvM 5039802..5040065 (-) 264 WP_003018017.1 acetolactate synthase 2 small subunit -
  NFJ20_RS24245 (NFJ20_24225) ilvG 5040062..5041708 (-) 1647 WP_279274169.1 acetolactate synthase 2 catalytic subunit -
  NFJ20_RS24250 (NFJ20_24230) ilvL 5041848..5041946 (-) 99 WP_001311244.1 ilv operon leader peptide -
  NFJ20_RS24255 (NFJ20_24235) comM 5042299..5043819 (+) 1521 WP_279274170.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NFJ20_RS24260 (NFJ20_24240) maoP 5043844..5044182 (-) 339 WP_003018025.1 macrodomain Ori organization protein MaoP -
  NFJ20_RS24265 (NFJ20_24245) hdfR 5044289..5045134 (+) 846 WP_085952510.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55166.10 Da        Isoelectric Point: 7.1227

>NTDB_id=698516 NFJ20_RS24255 WP_279274170.1 5042299..5043819(+) (comM) [Citrobacter freundii strain RHB02-E3-C01]
MSLSIVHTRAALGVNAPAITIEVHISNGLPGLTMVGLPETTVKEARDRVRSAVINSGYEFPAKKITINLAPADLPKEGER
YDLPIAVALLAASEQLTTHNLDTYELVGELALTGALRGVPGAISSATEAIRAGRRIIVAKENAAEVGLIQGEGCLIADHL
QAVCAFLEGKHDLDRPSSADFIPCALADDLSDVIGQEQGKRGLELTAAGGHNLILIGPPGTGKTMLASRLRGLLPPLSND
EALESAAILSLVNSDTLQKQWKQRPFRSPHHSASLTAMVGGGSIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLIAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSQNQVKG
EDSATVKQRVMAARDRQYRRQNKLNAHLDSQDIHKYCPLRSDDAQWLEETLAHLGLSIRAWLRLIKVARTIADIEQSDHI
SRQHLQEAVGYRAIDRLLIHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=698516 NFJ20_RS24255 WP_279274170.1 5042299..5043819(+) (comM) [Citrobacter freundii strain RHB02-E3-C01]
ATGTCACTATCGATTGTTCACACACGCGCAGCGCTGGGCGTGAATGCGCCAGCCATTACCATCGAGGTACATATCAGCAA
TGGTTTGCCTGGTTTAACCATGGTGGGATTACCCGAAACAACGGTAAAAGAGGCCCGCGATCGGGTTCGCAGTGCGGTAA
TCAATAGCGGTTATGAATTCCCGGCAAAGAAGATAACCATAAACCTCGCTCCGGCCGATCTCCCAAAAGAAGGGGAACGA
TATGATTTACCTATCGCAGTTGCGCTTCTGGCCGCTTCTGAGCAGCTTACTACCCATAATCTCGATACATATGAGCTGGT
AGGCGAATTAGCGCTTACAGGTGCGTTACGCGGCGTTCCCGGTGCGATATCAAGTGCAACCGAAGCCATTCGCGCAGGCA
GGAGAATTATTGTCGCAAAAGAGAATGCAGCTGAAGTTGGACTAATACAGGGTGAAGGGTGCCTCATAGCCGATCATCTA
CAGGCAGTATGCGCATTCCTCGAAGGTAAGCATGATTTAGACAGACCATCATCAGCAGATTTTATCCCCTGCGCATTAGC
AGATGATCTGAGCGATGTTATCGGCCAGGAACAGGGTAAACGCGGGCTGGAGCTTACCGCAGCTGGCGGTCATAACCTCA
TACTCATCGGCCCTCCGGGTACGGGTAAGACTATGCTGGCCAGTCGCCTGAGAGGATTGCTTCCGCCACTGAGTAACGAT
GAGGCACTGGAAAGCGCCGCGATTCTTAGTCTGGTCAATTCCGACACGCTACAGAAACAGTGGAAACAACGCCCTTTTCG
CTCTCCGCATCACAGTGCTTCATTAACCGCCATGGTCGGTGGAGGCTCTATTCCTGCGCCAGGCGAGATCTCTCTGGCGC
ATAACGGCATACTATTTCTGGATGAACTACCCGAGTTTGAGCGGCGCACGCTGGATGCACTGCGCGAACCCATTGAGTCC
GGACAGATACATCTATCCCGCACCAGAGCAAAAATCACCTATCCCGCTCGCTTTCAACTCATAGCCGCTATGAATCCCAG
CCCAACAGGCCATTATCAGGGGAACCATAACCGCTGTACCCCAGAGCAGACGCTACGCTACCTCAATCGATTATCAGGTC
CATTTCTTGACCGCTTCGATCTCTCTCTCGAAATCCCTTTGCCACCGCCCGGGATACTCAGCCAGAACCAGGTAAAAGGG
GAAGATAGCGCAACGGTGAAGCAACGTGTTATGGCAGCGCGAGATCGTCAGTATCGACGACAAAATAAGTTAAACGCGCA
TCTGGACAGTCAGGATATCCATAAATACTGTCCACTGCGCAGCGACGATGCACAGTGGCTTGAAGAAACGCTCGCGCATC
TCGGATTATCCATCCGCGCCTGGTTACGCCTGATAAAGGTCGCTCGAACGATCGCGGATATAGAGCAATCTGACCATATC
TCTCGCCAGCACTTACAGGAGGCTGTTGGGTATCGGGCGATAGACAGATTACTCATTCATTTGCAGAAACTACTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

57.937

99.605

0.577
  comM Glaesserella parasuis strain SC1401

57.48

100

0.577
  comM Vibrio cholerae strain A1552

57.968

99.209

0.575
  comM Haemophilus influenzae Rd KW20

56.556

100

0.571
  comM Legionella pneumophila str. Paris

46.881

98.221

0.46
  comM Legionella pneumophila strain ERS1305867

46.881

98.221

0.46
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.52

100

0.427