Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   HXS62_RS16170 Genome accession   NZ_AP023230
Coordinates   3379140..3379877 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain YJ4     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3374140..3384877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HXS62_RS16140 yfiL 3374298..3374663 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  HXS62_RS16145 aroF 3374873..3375943 (+) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  HXS62_RS16150 tyrA 3375954..3377075 (+) 1122 WP_176486914.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  HXS62_RS16155 pheA 3377118..3378278 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  HXS62_RS16160 pheL 3378377..3378424 (-) 48 WP_010723158.1 phe operon leader peptide -
  HXS62_RS16165 raiA 3378528..3378869 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  HXS62_RS16170 comL 3379140..3379877 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  HXS62_RS16175 rluD 3380012..3380992 (+) 981 WP_000079099.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  HXS62_RS16180 yfiH 3380989..3381720 (+) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  HXS62_RS16185 clpC 3381850..3384423 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=69836 HXS62_RS16170 WP_000197686.1 3379140..3379877(-) (comL) [Escherichia coli strain YJ4]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=69836 HXS62_RS16170 WP_000197686.1 3379140..3379877(-) (comL) [Escherichia coli strain YJ4]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment