Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NE424_RS12485 Genome accession   NZ_CP098795
Coordinates   2573834..2575321 (+) Length   495 a.a.
NCBI ID   WP_000010445.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain VB280821     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2568834..2580321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NE424_RS12460 (NE424_12460) ribD 2569750..2570835 (-) 1086 WP_017897094.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  NE424_RS12465 (NE424_12465) nrdR 2570851..2571309 (-) 459 WP_000543541.1 transcriptional regulator NrdR -
  NE424_RS12470 (NE424_12470) - 2571468..2572865 (-) 1398 WP_000738520.1 ammonium transporter -
  NE424_RS12475 (NE424_12475) glnK 2572923..2573261 (-) 339 WP_000780326.1 P-II family nitrogen regulator -
  NE424_RS12480 (NE424_12480) - 2573541..2573768 (+) 228 WP_000894500.1 accessory factor UbiK family protein -
  NE424_RS12485 (NE424_12485) comM 2573834..2575321 (+) 1488 WP_000010445.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NE424_RS12490 (NE424_12490) - 2575336..2576770 (-) 1435 Protein_2456 PLP-dependent aminotransferase family protein -
  NE424_RS12495 (NE424_12495) - 2576882..2577658 (+) 777 WP_000845026.1 aldolase -
  NE424_RS12500 (NE424_12500) - 2577674..2578552 (+) 879 WP_031966655.1 dihydrodipicolinate synthase family protein -
  NE424_RS12505 (NE424_12505) - 2578594..2579406 (-) 813 WP_031966653.1 TorF family putative porin -
  NE424_RS12510 (NE424_12510) - 2579463..2579633 (-) 171 WP_002009550.1 hypothetical protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54551.52 Da        Isoelectric Point: 7.5788

>NTDB_id=698072 NE424_RS12485 WP_000010445.1 2573834..2575321(+) (comM) [Acinetobacter baumannii strain VB280821]
MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPENCTEDFEFIGELALDGHVRPVSGALTLAMACQQAQHKIVLPVDNSQDINHLPNLECYPVNHL
KEVCEHFLGTQKLAHAQPSVHSNKMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLST
QETLEVASIYSISNTPHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE
IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPAE
DSTTVRQRVIYAYEQQMQRQDCLNQALSPKQLEQHAVLDSTSQRMIEMAQQRLNLSARAYHRVLRVARTIADLAQSEVIQ
SPHLTEALSYRGNHS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=698072 NE424_RS12485 WP_000010445.1 2573834..2575321(+) (comM) [Acinetobacter baumannii strain VB280821]
ATGTCTTTTTCTAAAATTTATACTCGGGGACTTTTAGGATTACATGCGCCTCTCATTGAGGTTGAGGTGCATGTGAGTCA
AGGATTACCCTCTCTAACTATTGTAGGCTTAGCGGAAGCAGCCGTTAGGGAAAGTAAGGATAGGGTTCGCTCAGCTATTA
TTAACAGTGGATTTCAATTTCCAACTAAGCGGCTGACCATTAACCTTGCTCCTGCAGATTTGCCCAAAGATGGTTCACGG
CTAGATTTACCAATTGCTTTAGGCATCTTAATTGCCTCTGGTCAACTTCCGGAAAACTGCACAGAAGACTTTGAATTTAT
TGGAGAGTTGGCTCTAGACGGTCATGTAAGACCCGTATCAGGCGCTTTAACTTTAGCAATGGCATGCCAGCAAGCTCAGC
ATAAAATCGTTTTACCCGTCGATAATAGCCAAGATATTAACCATTTACCTAATCTTGAGTGTTATCCGGTTAATCATTTA
AAAGAGGTGTGCGAGCACTTTTTAGGCACACAAAAGCTAGCTCATGCACAGCCAAGTGTCCATTCAAATAAAATGCCCTA
TAAATTTGATCTTGCAGATGTTAAAGGTCAGCTACGCCCACGGCGTGCACTAGAAATTGCTGCCGCTGGGGGACACTCCC
TGCTCTTTAAAGGACCACCAGGCACAGGTAAAACTTTATTGGCCTCACGCCTGCCTTCAATTTTACCGCCACTTTCTACT
CAAGAAACTCTTGAAGTTGCAAGTATTTATTCTATTTCAAATACACCACATACTTTTGGGCAGCGTCCGTTTCGCGCGCC
CCACCATACAGCATCAGCAATTGCACTGGTTGGGGGCGGTTCACACCCTAAACCGGGTGAAATTACTTTATCTCATTTAG
GTGTTCTATTTTTAGATGAACTTCCCGAGTTTGACAGAAAGGTTCTAGAAGTCTTACGCCAACCGCTTGAGTCAAAAGAA
ATCATTATTTCACGTGCGGCGCGGCAAATTACTTATCCTGCGAACTTTCAGCTCATTGCAGCAATGAATCCTTGTCCATG
TGGGTATGCATTTAATCAAGATAGCCGTTGTCAGTGTTCACCAGAAAGCATTAAGCGCTATCAAAACCGCATATCGGGAC
CGTTACTTGACCGCATCGATTTACATATTGATGTACCGCCATTAAAAGCTCAAGAACTGCAAGACCCAACACCTGCAGAA
GATTCTACAACTGTGCGACAACGTGTGATTTATGCTTATGAACAACAAATGCAAAGACAGGATTGTTTGAATCAGGCGCT
CTCACCCAAACAACTGGAACAACATGCCGTTCTTGATAGTACTTCACAGCGAATGATTGAAATGGCTCAGCAACGTTTAA
ATTTATCTGCTCGTGCTTATCATCGTGTTTTACGGGTTGCTCGTACTATTGCCGATTTGGCCCAAAGTGAGGTCATTCAA
AGTCCTCATCTTACAGAAGCACTCTCTTATCGAGGTAATCATTCTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.21

100

0.513
  comM Glaesserella parasuis strain SC1401

50.1

100

0.505
  comM Haemophilus influenzae Rd KW20

49.098

100

0.495
  comM Legionella pneumophila strain ERS1305867

48.996

100

0.493
  comM Legionella pneumophila str. Paris

48.996

100

0.493
  comM Vibrio campbellii strain DS40M4

48.485

100

0.485
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.6

100

0.471