Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   NE421_RS01315 Genome accession   NZ_CP098791
Coordinates   280378..280704 (+) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain 280820     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 275378..285704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NE421_RS01290 (NE421_01290) hemC 275995..276912 (+) 918 WP_031956197.1 hydroxymethylbilane synthase -
  NE421_RS01295 (NE421_01295) - 276917..277684 (+) 768 WP_000897412.1 uroporphyrinogen-III synthase -
  NE421_RS01300 (NE421_01300) - 277693..278532 (+) 840 WP_001230196.1 hypothetical protein -
  NE421_RS01305 (NE421_01305) - 278542..279735 (+) 1194 WP_000681773.1 hypothetical protein -
  NE421_RS01310 (NE421_01310) - 279743..280183 (+) 441 WP_000661569.1 thioesterase family protein -
  NE421_RS01315 (NE421_01315) hns 280378..280704 (+) 327 WP_000801427.1 H-NS histone family protein Regulator
  NE421_RS01320 (NE421_01320) gspN 281036..281779 (+) 744 WP_000730343.1 type II secretion system protein N -
  NE421_RS01325 (NE421_01325) - 281779..282615 (+) 837 WP_000870031.1 type II secretion system protein N -
  NE421_RS01330 (NE421_01330) gspD 282657..284933 (+) 2277 WP_001196426.1 type II secretion system secretin GspD -
  NE421_RS01335 (NE421_01335) - 284974..285603 (+) 630 WP_000219964.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=698011 NE421_RS01315 WP_000801427.1 280378..280704(+) (hns) [Acinetobacter baumannii strain 280820]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=698011 NE421_RS01315 WP_000801427.1 280378..280704(+) (hns) [Acinetobacter baumannii strain 280820]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTTAGTGTTGAACAACTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACGGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1