Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   PCP72_RS21380 Genome accession   NZ_CP115239
Coordinates   4538740..4539264 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain F045     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4533740..4544264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP72_RS21365 (PCP72_21340) aroB 4534856..4535962 (-) 1107 WP_012614628.1 3-dehydroquinate synthase -
  PCP72_RS21370 (PCP72_21345) aroK 4536012..4536530 (-) 519 WP_003095833.1 shikimate kinase AroK -
  PCP72_RS21375 (PCP72_21350) pilQ 4536542..4538686 (-) 2145 WP_012614629.1 type 4a pilus secretin PilQ Machinery gene
  PCP72_RS21380 (PCP72_21355) comL/pilP 4538740..4539264 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PCP72_RS21385 (PCP72_21360) pilO 4539261..4539884 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  PCP72_RS21390 (PCP72_21365) pilN 4539881..4540477 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  PCP72_RS21395 (PCP72_21370) pilM 4540477..4541541 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  PCP72_RS21400 (PCP72_21375) - 4541726..4544194 (+) 2469 WP_003114576.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=698010 PCP72_RS21380 WP_003095836.1 4538740..4539264(-) (comL/pilP) [Pseudomonas aeruginosa strain F045]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=698010 PCP72_RS21380 WP_003095836.1 4538740..4539264(-) (comL/pilP) [Pseudomonas aeruginosa strain F045]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362