Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ND013_RS01735 Genome accession   NZ_CP098778
Coordinates   362048..362578 (+) Length   176 a.a.
NCBI ID   WP_006177466.1    Uniprot ID   A0AAE4E8Q4
Organism   Enterobacter hormaechei strain YQ13422hy     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 357048..367578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ND013_RS01715 aphA 357372..358085 (+) 714 WP_017382626.1 acid phosphatase AphA -
  ND013_RS01720 - 358198..358614 (+) 417 WP_047718423.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  ND013_RS01725 - 358617..358970 (+) 354 WP_017382628.1 MmcQ/YjbR family DNA-binding protein -
  ND013_RS01730 uvrA 358974..361796 (-) 2823 WP_003860287.1 excinuclease ABC subunit UvrA -
  ND013_RS01735 ssb 362048..362578 (+) 531 WP_006177466.1 single-stranded DNA-binding protein SSB1 Machinery gene
  ND013_RS01740 - 362640..362921 (-) 282 WP_003860282.1 YjcB family protein -
  ND013_RS01745 - 363365..364765 (+) 1401 WP_032672109.1 sensor domain-containing diguanylate cyclase -
  ND013_RS01750 - 365030..366595 (+) 1566 WP_126499217.1 EAL domain-containing protein -
  ND013_RS01755 soxS 366602..366928 (-) 327 WP_003860277.1 superoxide response transcriptional regulator SoxS -
  ND013_RS01760 soxR 367027..367485 (+) 459 WP_003860275.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18835.84 Da        Isoelectric Point: 5.2456

>NTDB_id=697901 ND013_RS01735 WP_006177466.1 362048..362578(+) (ssb) [Enterobacter hormaechei strain YQ13422hy]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQNQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=697901 ND013_RS01735 WP_006177466.1 362048..362578(+) (ssb) [Enterobacter hormaechei strain YQ13422hy]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGAGAAATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCCGAAGTGGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGACCAATCCGGCGCTGAGAAGTACACCACGGAAGTGGTGGTGAATGTGGG
CGGCACCATGCAAATGCTGGGTGGTCGTCAGGGCGGTGGCGCACCGGCAGGTGGCGGTCAGAATCAGCAGCAGGGTGGTT
GGGGTCAGCCTCAGCAGCCTCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCCCGTCCGCAGCAGCAGTCTGCTCCG
GCACCGTCTAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.667

100

0.784
  ssb Glaesserella parasuis strain SC1401

56.216

100

0.591
  ssb Neisseria meningitidis MC58

46.629

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.472
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.364