Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NES82_RS01730 Genome accession   NZ_CP098777
Coordinates   237623..239143 (-) Length   506 a.a.
NCBI ID   WP_252142372.1    Uniprot ID   -
Organism   Cronobacter sakazakii strain JXES-28     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 232623..244143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NES82_RS01720 (NES82_01720) hdfR 236264..237097 (-) 834 WP_087600399.1 HTH-type transcriptional regulator HdfR -
  NES82_RS01725 (NES82_01725) - 237205..237543 (+) 339 WP_004387280.1 DUF413 domain-containing protein -
  NES82_RS01730 (NES82_01730) comM 237623..239143 (-) 1521 WP_252142372.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NES82_RS01735 (NES82_01735) ilvL 239495..239593 (+) 99 WP_071601137.1 ilv operon leader peptide -
  NES82_RS01740 (NES82_01740) ilvG 239732..241378 (+) 1647 WP_069683007.1 acetolactate synthase 2 catalytic subunit -
  NES82_RS01745 (NES82_01745) ilvM 241375..241632 (+) 258 WP_004387277.1 acetolactate synthase 2 small subunit -
  NES82_RS01750 (NES82_01750) - 241653..242582 (+) 930 WP_004387276.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54931.27 Da        Isoelectric Point: 7.8108

>NTDB_id=697879 NES82_RS01730 WP_252142372.1 237623..239143(-) (comM) [Cronobacter sakazakii strain JXES-28]
MSLSVIHTRAALGVKAPLVTVEVHISAGLPGLTIVGLPETTVKEARDRVRSALINSGYEFPAKKVTINLAPADLPKEGGR
YDLPIAIALLAASEQLSASHLGEYEFVGELALTGALRGVPGAISAAIEALGCKRKIIVAHDNGPEVGLINKEGCLVAYHL
QEVCAFLEGKTQLEYAEPSGFEFREPAGDLGEVIGQPQGKRALELTAAGGHNLLFIGPPGTGKTMLASRLNGLLPPLSDQ
EALESAAILSLVNPVSLHHQLRQRPFRAPHHSASLNAMVGGGAIPAPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GQIHLSRTRAKLTYPARFQLIAAMNPSPTGHYKGNHNRCSPEQTLRYLGRLSGPFLDRFDLSLEIPLPPPGMLSQAGQTG
ESSAQVRERVIVSRERQFARQGKLNAMLDNREIRQFCVLSPEDAQWLEAALIKLGLSVRAWQRLLKVARTIADCEQKQRI
SREHLQEALSYRAIDRMLAHLQNMMA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=697879 NES82_RS01730 WP_252142372.1 237623..239143(-) (comM) [Cronobacter sakazakii strain JXES-28]
ATGTCGTTATCAGTTATTCATACCCGCGCTGCGCTTGGGGTTAAGGCGCCGCTCGTGACAGTTGAAGTACATATCAGCGC
CGGGCTACCCGGCCTGACTATTGTCGGCTTACCGGAAACCACCGTTAAAGAAGCCAGAGATCGCGTACGCAGCGCGCTTA
TCAATAGCGGTTATGAATTTCCGGCTAAAAAGGTAACCATCAATCTGGCACCGGCGGATCTACCTAAAGAAGGTGGGCGA
TATGATTTACCTATCGCCATCGCGCTTCTGGCCGCCTCTGAGCAATTGAGCGCATCCCATCTTGGTGAATATGAATTTGT
AGGTGAGCTGGCGCTTACAGGCGCGCTGAGAGGCGTTCCCGGCGCAATTTCAGCCGCCATTGAGGCTCTGGGTTGTAAAA
GGAAAATTATCGTCGCGCATGATAATGGCCCTGAAGTAGGACTCATCAATAAAGAGGGTTGCCTTGTGGCTTATCATCTA
CAGGAGGTCTGCGCCTTCCTGGAAGGAAAAACACAGCTGGAATACGCTGAGCCATCCGGCTTTGAATTCAGAGAGCCGGC
GGGAGATCTGGGCGAGGTTATCGGTCAACCACAGGGAAAGCGCGCGCTTGAGTTAACCGCAGCGGGTGGGCATAACCTGC
TTTTTATTGGGCCCCCTGGTACAGGTAAAACCATGCTTGCCAGCAGACTCAATGGGTTACTGCCGCCTCTGAGCGACCAG
GAGGCGCTGGAGAGCGCTGCGATACTCAGCCTGGTCAACCCCGTCTCTTTACACCATCAATTGCGTCAGCGTCCATTCAG
GGCCCCTCACCATAGCGCATCGCTTAACGCCATGGTGGGCGGAGGAGCAATTCCTGCGCCAGGAGAGATCTCACTTGCCC
ATAACGGCGTGCTTTTTCTGGATGAATTACCTGAGTTTGAACGTCGCGTACTGGATGCTTTACGCGAGCCGATTGAATCA
GGGCAAATCCATCTTTCACGAACCAGGGCGAAATTAACCTATCCCGCGCGTTTTCAGCTTATTGCTGCCATGAATCCTAG
TCCGACAGGGCACTACAAAGGCAATCACAATCGCTGCTCACCGGAACAAACGCTGCGCTATCTTGGACGGCTTTCCGGGC
CATTTCTAGACAGGTTTGATCTCTCCCTTGAAATCCCGCTTCCCCCGCCGGGTATGCTTAGCCAGGCAGGACAGACCGGT
GAAAGCAGCGCGCAAGTAAGGGAACGAGTCATTGTTAGCAGAGAGCGTCAGTTTGCACGTCAGGGAAAACTCAACGCCAT
GTTGGATAACCGGGAAATACGTCAGTTTTGTGTGCTTAGTCCGGAGGACGCGCAGTGGCTGGAGGCAGCATTAATCAAAC
TGGGGTTGTCGGTTCGCGCCTGGCAGCGTTTACTTAAAGTGGCACGCACAATTGCAGATTGTGAACAGAAACAAAGGATT
AGTCGTGAGCATCTTCAGGAGGCACTGAGCTATCGTGCAATAGACAGGATGCTGGCCCATTTACAGAACATGATGGCGTA
G

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

61.1

100

0.615
  comM Glaesserella parasuis strain SC1401

59.566

100

0.597
  comM Vibrio cholerae strain A1552

60.159

99.209

0.597
  comM Vibrio campbellii strain DS40M4

59.96

99.209

0.595
  comM Legionella pneumophila str. Paris

47.211

99.209

0.468
  comM Legionella pneumophila strain ERS1305867

47.211

99.209

0.468
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.811

100

0.441