Detailed information    

insolico Bioinformatically predicted

Overview

Name   htrA   Type   Regulator
Locus tag   LLCC_RS03560 Genome accession   NZ_AP018499
Coordinates   695299..696522 (-) Length   407 a.a.
NCBI ID   WP_021164968.1    Uniprot ID   A0A166Z084
Organism   Lactococcus cremoris strain C4     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 690299..701522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLCC_RS03535 (LLCC_0754) - 690413..691165 (+) 753 WP_021164964.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  LLCC_RS03540 (LLCC_0755) - 691222..692226 (-) 1005 WP_021164965.1 hypothetical protein -
  LLCC_RS03545 (LLCC_0756) - 692369..692593 (-) 225 WP_011677198.1 YkuJ family protein -
  LLCC_RS03550 (LLCC_0757) - 692701..694041 (-) 1341 WP_061778014.1 glycosyltransferase family 4 protein -
  LLCC_RS03555 (LLCC_0758) - 694179..695177 (-) 999 WP_014573349.1 glycosyltransferase family 4 protein -
  LLCC_RS03560 (LLCC_0759) htrA 695299..696522 (-) 1224 WP_021164968.1 S1C family serine protease Regulator
  LLCC_RS03565 (LLCC_0760) rlmH 696898..697377 (+) 480 WP_021164969.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  LLCC_RS03570 (LLCC_0761) - 697395..698093 (+) 699 Protein_665 DNA alkylation repair protein -
  LLCC_RS03575 (LLCC_0762) yajC 698188..698520 (+) 333 WP_011677192.1 preprotein translocase subunit YajC -
  LLCC_RS03580 (LLCC_0763) - 698870..699604 (+) 735 WP_126354648.1 isoprenyl transferase -
  LLCC_RS03585 (LLCC_0764) - 699604..700407 (+) 804 WP_011677190.1 phosphatidate cytidylyltransferase -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 41585.05 Da        Isoelectric Point: 5.3802

>NTDB_id=69783 LLCC_RS03560 WP_021164968.1 695299..696522(-) (htrA) [Lactococcus cremoris strain C4]
MAKANIGKLLLTGVVGGAIALGGSAIYQSTTNQLGNANRSNTTSTKVSNVSVNVNTDVTSAIKKVSNSVVSVMNYQKQNS
QSDFSSIFGGNSGSSSANDSLQLSSEGSGVIYKKSGGDAYVVTNYHVIAGNSSLDVLLSGGQKVKATVVGYDEYTDLAVL
KISSDHVKDVATFADSSKLTIGEPAIAVGSPLGSQFANTATEGILSATSRQVTLTQENGQTTSINAIQTDAAINPGNSGG
ALINIEGQVIGITQSKITTTEDGSTSVEGLGFAIPSNDVVNIINKLETDGKISRPALGIRMVDLSQLSTNDSSQLKLPSS
VTGGLVVYSVQAGLPAATAGLKAGDVITKVGDTAVTSSTDLQSALYSHNINDTVKVTYYRDGKSATANVKLSKSTSDLET
NSSSSSN

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=69783 LLCC_RS03560 WP_021164968.1 695299..696522(-) (htrA) [Lactococcus cremoris strain C4]
ATGGCAAAAGCTAATATAGGAAAATTGCTATTAACCGGTGTTGTGGGTGGAGCTATCGCACTCGGAGGAAGCGCAATTTA
TCAAAGCACTACAAACCAACTAGGAAATGCTAACCGCTCAAATACAACTAGCACAAAGGTTAGTAATGTTTCGGTAAATG
TCAATACCGATGTCACCTCTGCAATTAAAAAAGTTTCAAATTCTGTCGTTTCTGTTATGAATTATCAAAAACAGAATTCA
CAAAGTGATTTTAGTTCAATTTTTGGTGGAAATAGCGGCTCAAGTTCAGCTAATGACAGCTTGCAACTTTCCAGTGAGGG
TTCTGGTGTTATTTATAAAAAATCTGGTGGAGATGCTTACGTGGTCACTAACTATCACGTTATTGCTGGAAATAGTTCCC
TCGATGTTTTACTTTCTGGTGGGCAAAAAGTTAAAGCCACAGTTGTTGGTTATGATGAATACACTGACCTTGCCGTTCTT
AAAATCAGCTCTGACCATGTTAAAGACGTGGCAACTTTCGCTGATTCAAGCAAGTTAACTATTGGTGAACCAGCTATTGC
AGTCGGCTCACCTTTAGGTAGCCAGTTTGCTAATACTGCAACCGAAGGAATTCTGTCTGCAACAAGTCGTCAAGTCACTT
TGACTCAAGAAAATGGTCAAACAACAAGTATCAATGCGATTCAAACGGATGCTGCCATTAACCCGGGTAACTCAGGTGGA
GCCTTGATTAATATTGAAGGTCAAGTGATTGGTATTACTCAAAGTAAAATCACAACGACCGAAGATGGTTCTACCTCTGT
GGAAGGTTTAGGTTTTGCTATCCCATCTAATGATGTGGTAAACATCATTAATAAACTTGAAACTGATGGTAAGATTTCAC
GTCCTGCCTTAGGTATTCGTATGGTTGACCTATCTCAATTATCAACAAATGATAGTTCTCAACTGAAATTACCTAGCAGC
GTAACTGGTGGATTGGTTGTCTACTCTGTTCAAGCGGGTCTTCCTGCTGCCACAGCTGGTCTGAAAGCTGGCGATGTGAT
AACGAAGGTGGGAGATACCGCCGTTACTTCATCAACAGACTTACAAAGTGCTCTTTACTCACACAATATTAATGATACTG
TGAAAGTCACCTACTACCGTGATGGTAAATCAGCCACAGCAAATGTTAAACTCTCTAAATCAACAAGCGATTTAGAAACA
AATAGTTCATCTTCTTCTAATTAA

Domains

Predicted by InterproScan.

Peptidase family M50 (Peptidase_M50)

(237-395)

PDZ domain (PDZ_2)

(295-391)

Trypsin-like peptidase domain (Trypsin_2)

(107-252)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A166Z084

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mitis NCTC 12261

55.875

94.103

0.526
  htrA Streptococcus gordonii str. Challis substr. CH1

54.872

95.823

0.526
  htrA Streptococcus pneumoniae Rx1

58.14

84.521

0.491
  htrA Streptococcus pneumoniae D39

58.14

84.521

0.491
  htrA Streptococcus pneumoniae R6

58.14

84.521

0.491
  htrA Streptococcus pneumoniae TIGR4

58.14

84.521

0.491
  htrA Streptococcus mutans UA159

53.117

90.663

0.482

Multiple sequence alignment