Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NDX50_RS08370 Genome accession   NZ_CP098757
Coordinates   1736727..1738247 (-) Length   506 a.a.
NCBI ID   WP_004116935.1    Uniprot ID   A0A9P0U427
Organism   Klebsiella oxytoca strain AHC-6     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1731727..1743247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDX50_RS08360 (NDX50_08350) hdfR 1735425..1736246 (-) 822 WP_064398877.1 HTH-type transcriptional regulator HdfR -
  NDX50_RS08365 (NDX50_08355) - 1736365..1736703 (+) 339 WP_004097464.1 DUF413 domain-containing protein -
  NDX50_RS08370 (NDX50_08360) comM 1736727..1738247 (-) 1521 WP_004116935.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NDX50_RS08375 (NDX50_08365) ilvL 1738598..1738696 (+) 99 WP_001311244.1 ilv operon leader peptide -
  NDX50_RS08380 (NDX50_08370) ilvG 1738836..1740482 (+) 1647 WP_064371103.1 acetolactate synthase 2 catalytic subunit -
  NDX50_RS08385 (NDX50_08375) ilvM 1740479..1740736 (+) 258 WP_004107599.1 acetolactate synthase 2 small subunit -
  NDX50_RS08390 (NDX50_08380) ilvE 1740753..1741682 (+) 930 WP_004107600.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55346.74 Da        Isoelectric Point: 8.4834

>NTDB_id=697761 NDX50_RS08370 WP_004116935.1 1736727..1738247(-) (comM) [Klebsiella oxytoca strain AHC-6]
MSLAIVYTRAALGIGAPLITVEVHISNGLPGLTMVGLPETTVREARDRVRSAIINSGYAWPAKKITINLAPADLPKEGGR
YDLPIALALLVASEQLNAPRLNQYEFVGELALTGALRGVPGAISSAMEAIRAGRKIIVSHENSPEVGLIGGSDCLIAAHL
QEVCAFLEGKNPLNHPIPEAETSDESSLDLREVIGQQQGKRALEIIAAGGHNLLMIGPPGTGKTMLASRLPGLLPPLSNQ
EALESAAILSLVNSSYAMKNWRRRPFRAPHHSASLAAMVGGGSIPTPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GVIHISRTRAKIDYPARFQLIAAMNPSPTGHYQGQHNRASPEQTLRYLARLSGPFLDRFDLSLEIPLPPPGVLSRGTNEE
ESSACVRQRVLAAHERQLSRQKKLNANLGNNEMKIWCQLHQDDAIWLEQTLTQLGLSIRAWQRLLKVSRTIADIEKVDRI
ERRHLQEALGYRAIDRMLSHLQKMMT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=697761 NDX50_RS08370 WP_004116935.1 1736727..1738247(-) (comM) [Klebsiella oxytoca strain AHC-6]
ATGTCACTCGCCATTGTTTACACCCGCGCCGCTCTTGGGATCGGCGCCCCCCTTATCACAGTTGAAGTTCATATCAGCAA
CGGACTCCCTGGCCTGACGATGGTAGGGTTGCCTGAAACAACGGTCAGAGAAGCGCGTGACCGGGTACGTAGTGCGATTA
TCAACAGCGGCTACGCCTGGCCGGCGAAAAAAATCACCATCAATCTGGCGCCAGCCGATTTACCAAAAGAAGGGGGAAGA
TATGATTTACCTATCGCTCTCGCGCTTCTGGTGGCCTCTGAGCAGCTAAATGCTCCCAGGCTAAATCAATACGAGTTTGT
CGGCGAGCTGGCGCTTACAGGCGCTCTACGTGGCGTTCCTGGGGCTATATCCAGCGCGATGGAGGCGATAAGAGCGGGCA
GAAAGATTATTGTCTCTCATGAGAATTCTCCTGAGGTGGGTTTAATTGGCGGCAGTGACTGTCTTATCGCCGCCCATCTT
CAGGAGGTCTGCGCCTTTCTGGAGGGAAAAAACCCGCTAAATCATCCTATTCCGGAAGCGGAGACCTCAGATGAGTCTTC
ATTAGACTTGCGCGAGGTTATTGGTCAGCAGCAAGGAAAGCGAGCGCTGGAAATTATCGCTGCAGGCGGACATAACCTGC
TGATGATAGGCCCACCCGGCACAGGGAAAACGATGCTTGCGAGTCGGCTGCCTGGGCTACTACCGCCGCTGAGTAACCAG
GAAGCGCTGGAAAGCGCGGCAATACTTAGCCTGGTCAATTCCAGTTATGCGATGAAAAACTGGCGCCGCAGGCCATTTCG
AGCTCCGCATCATAGCGCGTCCCTGGCTGCGATGGTGGGTGGCGGCTCTATTCCAACACCGGGAGAGATCTCTCTCGCTC
ATAATGGCGTGCTGTTCCTGGATGAGCTGCCCGAATTTGAACGCAGGGTTCTGGATGCATTAAGAGAACCGATTGAATCC
GGGGTAATCCATATCTCCCGCACGCGCGCGAAAATCGATTATCCCGCCCGTTTTCAGCTTATTGCAGCAATGAATCCCAG
CCCCACGGGCCACTATCAGGGTCAGCATAATCGCGCATCTCCAGAACAGACGCTACGCTACCTGGCCCGTTTATCTGGCC
CATTTCTTGACCGTTTCGATCTCTCACTGGAAATTCCTCTGCCGCCGCCGGGGGTGCTTAGCCGGGGAACAAACGAAGAA
GAGAGCAGCGCCTGCGTACGCCAACGCGTTTTGGCTGCGCACGAAAGGCAACTGTCACGACAGAAAAAACTCAATGCAAA
TCTGGGGAATAATGAGATGAAAATCTGGTGCCAGCTTCATCAAGATGACGCAATCTGGCTGGAGCAGACGCTTACGCAAC
TGGGGCTCTCAATCCGGGCCTGGCAGCGCCTGCTTAAAGTTTCACGCACGATTGCCGATATTGAGAAGGTCGATCGTATT
GAACGCCGTCATTTGCAGGAGGCTCTTGGCTATCGGGCAATAGACAGAATGTTGAGCCATCTGCAAAAAATGATGACGTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

59.332

100

0.597
  comM Glaesserella parasuis strain SC1401

58.939

100

0.593
  comM Vibrio cholerae strain A1552

59.046

99.407

0.587
  comM Vibrio campbellii strain DS40M4

58.566

99.209

0.581
  comM Legionella pneumophila str. Paris

48.79

98.024

0.478
  comM Legionella pneumophila strain ERS1305867

48.79

98.024

0.478
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.291

100

0.445