Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NDR89_RS25060 Genome accession   NZ_CP098736
Coordinates   3271519..3273111 (+) Length   530 a.a.
NCBI ID   WP_252253095.1    Uniprot ID   -
Organism   Cupriavidus gilardii strain QJ1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3266519..3278111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDR89_RS25040 (NDR89_25040) amt 3267831..3269366 (-) 1536 WP_174781145.1 ammonium transporter -
  NDR89_RS25045 (NDR89_25045) - 3269421..3269759 (-) 339 WP_006159494.1 P-II family nitrogen regulator -
  NDR89_RS25050 (NDR89_25050) - 3269820..3270590 (-) 771 WP_174781144.1 TorF family putative porin -
  NDR89_RS25055 (NDR89_25055) - 3270971..3271225 (+) 255 Protein_3018 accessory factor UbiK family protein -
  NDR89_RS25060 (NDR89_25060) comM 3271519..3273111 (+) 1593 WP_252253095.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NDR89_RS25065 (NDR89_25065) - 3273514..3274173 (-) 660 WP_053820994.1 LysE family transporter -
  NDR89_RS25070 (NDR89_25070) - 3274315..3275688 (-) 1374 WP_252253096.1 MFS transporter -
  NDR89_RS25075 (NDR89_25075) - 3275688..3276272 (-) 585 WP_198751196.1 hypothetical protein -
  NDR89_RS25080 (NDR89_25080) - 3276487..3276963 (+) 477 WP_198751194.1 thioredoxin fold domain-containing protein -
  NDR89_RS25085 (NDR89_25085) - 3277044..3277589 (+) 546 WP_252253097.1 TlpA disulfide reductase family protein -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 55552.61 Da        Isoelectric Point: 9.0760

>NTDB_id=697510 NDR89_RS25060 WP_252253095.1 3271519..3273111(+) (comM) [Cupriavidus gilardii strain QJ1]
MHLAVLRSRALTGIDAPPVSVEIHLANGLPAFAIVGLAETEVRESRERVRAAILNCGFEFPNRRITVNLAPADLPKESGR
FDLAIALGILAASGQIPAPALDGYEFAAELSLSGMLRPVRGALAMAMGLAREQAAGAAAAAAAGAAARAGTGTNASAAAR
AFVVAAGNGAEAALVESVTVLAAASLPEVCAHLARTGPPLARARPGATAPLAGSPAGMPDMRDVRGQGQARRAMEVAAAG
QHSALLIGPPGTGKSMLAQRFPGLLPPMTLQEALESAAVLSLTGAGFHTERWSRRPFRSPHHTASAAAMVGGGGDPRPGE
ISLAHHGVLFLDELPEFERRVLEVLREPLESGRITISRAGRQADFPARFQFVAAMNPCPCGYQGHPARACRCTPDQVLRY
QSRLSGPLLDRIDLQIEVPAQSQQDTLDGPPGEDSAAIRARVLAARARQLERQGKPNGELAGQEIERHCPLDEQAQGLLR
AAMARLGWSARSYFRVLKVARTIADLGGADFIGTAHAAEAVQYRRVLRPV

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=697510 NDR89_RS25060 WP_252253095.1 3271519..3273111(+) (comM) [Cupriavidus gilardii strain QJ1]
ATGCACCTCGCCGTCCTGCGCAGCCGCGCGCTGACCGGCATCGACGCGCCGCCGGTCTCGGTCGAAATCCATCTGGCCAA
TGGCCTGCCGGCCTTCGCCATCGTCGGTCTCGCGGAGACCGAGGTGCGCGAGAGCCGCGAGCGCGTGCGCGCGGCGATCC
TGAACTGCGGCTTCGAATTTCCGAACCGCCGCATCACGGTCAATCTGGCGCCCGCCGATCTGCCCAAGGAATCGGGCCGC
TTCGACCTGGCGATCGCGCTCGGCATCCTCGCGGCCAGCGGGCAGATCCCGGCGCCGGCGCTGGACGGCTACGAGTTCGC
CGCCGAGCTGTCGCTGTCGGGTATGCTGCGGCCGGTGCGCGGCGCGCTGGCGATGGCGATGGGACTGGCGCGCGAGCAGG
CGGCCGGAGCCGCAGCCGCAGCCGCAGCCGGAGCAGCAGCAAGAGCTGGGACAGGGACCAATGCCAGCGCCGCCGCTCGC
GCCTTCGTGGTCGCGGCCGGCAACGGCGCCGAGGCCGCGCTGGTCGAGTCGGTCACGGTGCTGGCGGCCGCCTCGCTGCC
CGAGGTCTGCGCGCACCTGGCCCGCACCGGCCCGCCGCTGGCGCGGGCCCGGCCCGGAGCGACGGCACCCTTGGCCGGTT
CGCCCGCCGGCATGCCGGACATGCGCGACGTCCGCGGCCAGGGGCAGGCGCGCCGCGCGATGGAGGTGGCGGCCGCGGGC
CAGCACTCCGCCTTGCTGATCGGGCCGCCCGGCACCGGCAAGTCGATGCTGGCGCAGCGCTTTCCCGGGCTGCTGCCGCC
GATGACGCTGCAGGAGGCGCTCGAATCGGCCGCGGTGCTGAGCCTGACCGGCGCCGGCTTCCACACCGAGCGCTGGAGCC
GCCGGCCGTTCCGCTCGCCCCACCATACCGCCTCGGCGGCCGCGATGGTCGGCGGTGGCGGCGATCCGCGCCCCGGCGAG
ATTTCGCTGGCGCATCACGGCGTGCTGTTCCTCGACGAGTTGCCCGAGTTCGAGCGGCGCGTGCTGGAGGTCCTGCGCGA
GCCGCTGGAGTCGGGCCGCATCACGATCTCGCGTGCGGGCCGGCAGGCCGACTTCCCGGCACGCTTCCAGTTCGTCGCGG
CGATGAACCCCTGCCCCTGCGGCTACCAGGGCCATCCGGCCCGCGCCTGCCGCTGTACGCCCGACCAGGTGCTGCGCTAC
CAGTCGCGGCTGTCCGGGCCGCTGCTGGACCGGATCGATCTGCAGATCGAAGTGCCGGCGCAAAGCCAACAGGACACGCT
GGACGGCCCGCCCGGCGAGGACAGCGCGGCGATCCGCGCGCGCGTGCTGGCCGCCCGGGCGCGGCAGCTCGAACGGCAGG
GCAAACCCAACGGGGAACTGGCGGGACAGGAGATCGAGCGGCATTGCCCGCTCGACGAGCAGGCGCAGGGGCTGCTGCGC
GCCGCGATGGCACGGCTGGGCTGGTCGGCACGTTCGTACTTTCGCGTGCTGAAGGTCGCGCGGACCATTGCGGACCTGGG
CGGCGCGGATTTCATCGGCACGGCGCACGCCGCGGAGGCCGTGCAGTATCGGCGGGTATTGCGCCCGGTTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(432-524)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(220-424)

Subunit ChlI of Mg-chelatase (ChlI)

(21-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.803

99.434

0.515
  comM Vibrio campbellii strain DS40M4

50.377

100

0.504
  comM Haemophilus influenzae Rd KW20

48.872

100

0.491
  comM Glaesserella parasuis strain SC1401

48.204

99.811

0.481
  comM Legionella pneumophila str. Paris

47.736

100

0.477
  comM Legionella pneumophila strain ERS1305867

47.736

100

0.477
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.916

99.245

0.436