Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NDR89_RS24645 Genome accession   NZ_CP098736
Coordinates   3186983..3187501 (-) Length   172 a.a.
NCBI ID   WP_174781169.1    Uniprot ID   -
Organism   Cupriavidus gilardii strain QJ1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3181983..3192501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDR89_RS24625 (NDR89_24625) - 3182008..3182382 (+) 375 WP_252253077.1 hypothetical protein -
  NDR89_RS24630 (NDR89_24630) - 3182449..3184032 (-) 1584 WP_252253078.1 TerC family protein -
  NDR89_RS24635 (NDR89_24635) - 3184175..3185515 (-) 1341 WP_252253079.1 LLM class flavin-dependent oxidoreductase -
  NDR89_RS24640 (NDR89_24640) - 3185545..3186762 (-) 1218 WP_252253080.1 acyl-CoA dehydrogenase family protein -
  NDR89_RS24645 (NDR89_24645) ssb 3186983..3187501 (-) 519 WP_174781169.1 single-stranded DNA-binding protein Machinery gene
  NDR89_RS24650 (NDR89_24650) - 3187686..3188963 (-) 1278 WP_053821041.1 MFS transporter -
  NDR89_RS24655 (NDR89_24655) uvrA 3189436..3192330 (+) 2895 WP_252253081.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18275.02 Da        Isoelectric Point: 5.9518

>NTDB_id=697508 NDR89_RS24645 WP_174781169.1 3186983..3187501(-) (ssb) [Cupriavidus gilardii strain QJ1]
MASVNKVILVGNLGADPETRYMPSGDAVTNIRLATTDRYKDKQSGDMKELTEWHRVAFFGKLAEIAGQYLRKGSQVYIEG
RIRTRKWQDQSGQDKYSTEIVAEQMQMLGSRQGGGGGGDEGGGYARESSGGGYGGGGRGAQGGGGGNQGGGARRPQQSPS
NGFEDMDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=697508 NDR89_RS24645 WP_174781169.1 3186983..3187501(-) (ssb) [Cupriavidus gilardii strain QJ1]
ATGGCATCCGTCAACAAAGTCATCCTCGTCGGCAATCTCGGCGCGGACCCCGAAACGCGCTATATGCCCAGTGGCGATGC
CGTGACCAATATCCGGCTGGCCACCACCGACCGCTACAAGGACAAGCAGAGCGGCGACATGAAGGAGCTGACCGAATGGC
ACCGCGTGGCCTTCTTCGGCAAGCTCGCCGAGATCGCCGGCCAGTACCTGCGCAAGGGCTCCCAAGTCTATATCGAAGGG
CGCATCCGTACCCGCAAGTGGCAGGACCAGTCGGGCCAGGACAAGTACAGCACCGAAATCGTCGCTGAACAAATGCAGAT
GCTGGGCTCGCGCCAGGGCGGTGGCGGCGGCGGCGACGAAGGCGGCGGCTACGCCCGCGAATCGTCGGGCGGCGGCTATG
GTGGCGGTGGCCGCGGCGCCCAAGGCGGTGGCGGTGGCAACCAGGGCGGCGGCGCGCGCCGGCCGCAGCAGTCGCCGTCG
AACGGCTTCGAGGACATGGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.933

100

0.558
  ssb Glaesserella parasuis strain SC1401

51.667

100

0.541
  ssb Neisseria gonorrhoeae MS11

45.977

100

0.465
  ssb Neisseria meningitidis MC58

45.402

100

0.459
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.413

100

0.39