Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   M5E07_RS15180 Genome accession   NZ_CP098732
Coordinates   3151541..3153028 (+) Length   495 a.a.
NCBI ID   WP_252220492.1    Uniprot ID   A0AAE9S0C2
Organism   Acinetobacter tibetensis strain Y-23     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3146541..3158028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5E07_RS15155 (M5E07_15155) ribD 3147472..3148557 (-) 1086 WP_252220488.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  M5E07_RS15160 (M5E07_15160) nrdR 3148566..3149027 (-) 462 WP_116762406.1 transcriptional regulator NrdR -
  M5E07_RS15165 (M5E07_15165) - 3149168..3150571 (-) 1404 WP_252220490.1 ammonium transporter -
  M5E07_RS15170 (M5E07_15170) glnK 3150630..3150968 (-) 339 WP_016168502.1 P-II family nitrogen regulator -
  M5E07_RS15175 (M5E07_15175) - 3151247..3151474 (+) 228 WP_116762402.1 accessory factor UbiK family protein -
  M5E07_RS15180 (M5E07_15180) comM 3151541..3153028 (+) 1488 WP_252220492.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  M5E07_RS15185 (M5E07_15185) - 3153096..3153866 (-) 771 WP_252220494.1 TorF family putative porin -
  M5E07_RS15190 (M5E07_15190) - 3155115..3156455 (+) 1341 WP_252220496.1 OprD family outer membrane porin -
  M5E07_RS15195 (M5E07_15195) ppa 3156557..3157081 (-) 525 WP_116762394.1 inorganic diphosphatase -
  M5E07_RS15200 (M5E07_15200) - 3157194..3157592 (-) 399 WP_116762392.1 MAPEG family protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54516.32 Da        Isoelectric Point: 7.8320

>NTDB_id=697490 M5E07_RS15180 WP_252220492.1 3151541..3153028(+) (comM) [Acinetobacter tibetensis strain Y-23]
MSFAKINTRGLLGLHAPLIEVEVHLSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPSKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPEQNIDHLEFIGELALDGQLRPTTGTLSIAIACQQAQHQLVLPEQNALEAAQLPHFDVYAAKNL
KEVCEHLSQHKPLSPVQKPVDSPLHRYKFDLADVKGQLRPRRALEIAAAGGHSLLFRGPPGTGKTLLASRLPSILPPLSS
SENLEVASIYSVANSQHHFGHRPFRAPHHTASAIALVGGGSQPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRASRQMTYPANFQLIAAMNPCPCGYAFNQDQRCQCSTEAIKRYQNRISGPLLDRIDLHIDVPPLTVHELQAHAPAE
NSDQVRHRVTQAYEQQIQRQNCLNHALNPQQLEQFAGLNEQTQKMLELAQQRLNLSARAYHRVLRVARTIADLANSAEIQ
TGHLSEALSYRQQSL

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=697490 M5E07_RS15180 WP_252220492.1 3151541..3153028(+) (comM) [Acinetobacter tibetensis strain Y-23]
ATGTCTTTTGCAAAAATAAATACGCGAGGGCTATTGGGGCTGCATGCCCCACTGATTGAAGTCGAAGTTCATTTAAGTCA
AGGATTACCATCACTTACCATTGTAGGATTAGCAGAAGCTGCTGTTCGGGAAAGTAAAGATCGAGTCCGTTCAGCTATTA
TTAATAGTGGTTTTCAGTTTCCCAGTAAACGTCTCACGATTAATCTTGCACCAGCAGATTTGCCCAAAGATGGTTCACGC
CTAGATTTACCGATTGCCTTGGGCATTTTAATTGCGTCTGGACAACTTCCAGAACAAAATATCGATCATCTTGAATTTAT
TGGGGAATTGGCACTAGATGGTCAATTGCGCCCAACCACAGGGACTTTGAGTATTGCCATCGCGTGTCAGCAAGCGCAAC
ACCAATTGGTTTTGCCCGAACAAAATGCATTGGAGGCAGCACAACTGCCCCATTTTGATGTGTATGCAGCAAAAAATCTC
AAAGAAGTGTGCGAACACTTAAGCCAACACAAGCCGTTATCTCCTGTGCAAAAGCCTGTCGACTCACCTTTACATCGCTA
TAAATTTGATCTGGCTGATGTGAAAGGACAACTCCGTCCGCGACGGGCTTTAGAAATTGCAGCAGCAGGTGGTCATTCCT
TACTGTTTCGTGGCCCCCCAGGCACAGGTAAAACACTATTGGCATCGCGTTTACCCAGTATTCTTCCACCGCTCAGTTCT
AGTGAAAATTTAGAAGTAGCCAGTATTTATTCTGTTGCCAATTCGCAGCATCATTTTGGACATCGCCCTTTTCGCGCGCC
ACATCATACCGCTTCGGCCATTGCCTTGGTGGGTGGAGGGTCACAACCTAAACCTGGAGAAATTACTTTAGCGCATTTAG
GCGTTCTGTTTTTAGATGAACTTCCTGAATTTGATCGCAAAGTCTTGGAAGTACTTAGACAGCCTTTAGAATCCAAAGAA
ATTGTGATTTCTCGGGCATCCCGTCAAATGACTTATCCTGCCAATTTTCAGTTAATCGCTGCCATGAATCCTTGTCCATG
TGGCTACGCGTTTAATCAAGATCAACGTTGTCAATGTTCCACAGAGGCCATCAAACGTTATCAAAATCGAATTTCTGGTC
CTCTATTAGATCGCATAGATTTGCATATTGATGTACCACCGCTTACGGTACATGAATTACAAGCACATGCACCTGCTGAA
AATTCTGATCAAGTGCGTCATCGTGTGACTCAAGCCTATGAGCAACAAATTCAACGACAAAATTGTTTAAATCATGCTTT
GAACCCACAGCAACTGGAACAATTTGCAGGATTGAATGAGCAAACCCAAAAAATGCTTGAATTGGCTCAACAACGTTTAA
ATTTATCTGCGCGGGCTTATCATCGAGTTTTAAGAGTGGCCAGAACCATTGCTGACTTGGCAAATTCGGCTGAAATTCAA
ACTGGACATTTAAGTGAAGCTCTATCGTATCGGCAGCAAAGCCTTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Legionella pneumophila str. Paris

50.501

100

0.509
  comM Legionella pneumophila strain ERS1305867

50.501

100

0.509
  comM Vibrio campbellii strain DS40M4

50.707

100

0.507
  comM Vibrio cholerae strain A1552

50.707

100

0.507
  comM Glaesserella parasuis strain SC1401

49.701

100

0.503
  comM Haemophilus influenzae Rd KW20

49.699

100

0.501
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.614

100

0.473