Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   NEA10_RS17550 Genome accession   NZ_CP098611
Coordinates   4089409..4089774 (-) Length   121 a.a.
NCBI ID   WP_068789591.1    Uniprot ID   -
Organism   Phormidium yuhuli AB48     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4084409..4094774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NEA10_RS17540 (NEA10_17540) - 4085363..4088692 (-) 3330 WP_252662637.1 methyl-accepting chemotaxis protein -
  NEA10_RS17545 (NEA10_17545) - 4088860..4089396 (-) 537 WP_252662638.1 chemotaxis protein CheW -
  NEA10_RS17550 (NEA10_17550) pilH 4089409..4089774 (-) 366 WP_068789591.1 response regulator transcription factor Machinery gene
  NEA10_RS17555 (NEA10_17555) - 4090026..4091282 (-) 1257 WP_252662639.1 response regulator -
  NEA10_RS17560 (NEA10_17560) hmpF 4091685..4093406 (+) 1722 WP_252662640.1 pilus motility taxis protein HmpF -
  NEA10_RS17565 (NEA10_17565) tilS 4093410..4094390 (-) 981 WP_252662641.1 tRNA lysidine(34) synthetase TilS -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13384.56 Da        Isoelectric Point: 5.1949

>NTDB_id=697038 NEA10_RS17550 WP_068789591.1 4089409..4089774(-) (pilH) [Phormidium yuhuli AB48]
MSKVLVIEDSVTQREMIANLLRGSGLTVIEATDGVEALDKIQGNPPDLVVLDIVMPRMNGYEVCRRLKADPKTQNVPVVM
CSSKGEEFDRYWGMKQGADAYVAKPFQPTELVGTVKQMLRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=697038 NEA10_RS17550 WP_068789591.1 4089409..4089774(-) (pilH) [Phormidium yuhuli AB48]
ATGAGTAAAGTTCTGGTTATTGAAGATAGTGTGACCCAGCGGGAGATGATTGCAAACCTTTTGCGAGGGAGCGGACTAAC
CGTGATTGAGGCAACAGACGGTGTGGAGGCCTTGGATAAGATTCAGGGCAATCCTCCCGATTTGGTAGTTCTTGATATCG
TCATGCCGCGCATGAATGGCTATGAAGTGTGTCGTCGCCTTAAGGCTGACCCAAAAACCCAGAACGTACCCGTGGTGATG
TGTTCCTCCAAGGGGGAGGAGTTTGATCGCTACTGGGGGATGAAGCAAGGGGCCGATGCCTATGTGGCTAAACCCTTCCA
GCCCACGGAATTGGTGGGAACTGTCAAGCAAATGTTACGGGGTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

72.727

100

0.727
  pilG Acinetobacter baumannii strain A118

45.217

95.041

0.43
  vicR Streptococcus mutans UA159

40

99.174

0.397
  micA Streptococcus pneumoniae Cp1015

37.5

99.174

0.372
  pilL-C Synechocystis sp. PCC 6803

37.815

98.347

0.372