Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NDY25_RS08575 Genome accession   NZ_CP098604
Coordinates   1930011..1931531 (+) Length   506 a.a.
NCBI ID   WP_168959575.1    Uniprot ID   -
Organism   Xanthomonas hortorum pv. pelargonii strain OSU493     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1925011..1936531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDY25_RS08555 (NDY25_08540) - 1925819..1926502 (+) 684 WP_168959573.1 RIO1 family regulatory kinase/ATPase -
  NDY25_RS08560 (NDY25_08545) - 1926844..1928817 (-) 1974 WP_256627882.1 beta-N-acetylglucosaminidase domain-containing protein -
  NDY25_RS08565 (NDY25_08550) - 1929188..1929562 (-) 375 WP_199680230.1 P-II family nitrogen regulator -
  NDY25_RS08570 (NDY25_08555) - 1929716..1929994 (+) 279 WP_023905487.1 accessory factor UbiK family protein -
  NDY25_RS08575 (NDY25_08560) comM 1930011..1931531 (+) 1521 WP_168959575.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NDY25_RS08580 (NDY25_08565) - 1931621..1932130 (+) 510 WP_168959576.1 lipocalin family protein -
  NDY25_RS08585 (NDY25_08570) - 1932629..1932805 (-) 177 WP_006449000.1 hypothetical protein -
  NDY25_RS08590 (NDY25_08575) - 1933190..1934752 (+) 1563 WP_168959577.1 EAL domain-containing protein -
  NDY25_RS08595 (NDY25_08580) - 1935004..1936128 (-) 1125 WP_168959578.1 acyl-CoA desaturase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53890.71 Da        Isoelectric Point: 8.3450

>NTDB_id=697006 NDY25_RS08575 WP_168959575.1 1930011..1931531(+) (comM) [Xanthomonas hortorum pv. pelargonii strain OSU493]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKEGGR
FDLPIALGILAASGQIDRQALAEYEFLGELALTGELRGVDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVEAFTARTL
LEVCATLNGTQKAPAAELAVQALGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPGLLPEASE
AEALETAAITSISGRGLDLVRWRQRPYRAPHHTASAVALVGGGTHPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGMVTISRAARSVDFPARFQLVAAMNPCPCGWAGDSSGRCRCSSDTIGRYRSRISGPLLDRIDLHVEVPRLPPQALRSGN
VGEDSASVRTRVVAARVRQLARAGVPNAQLDQAQTDHHCRLQHDDQLLLERAIEHLQLSARSMHRILRVARTIADLDDSA
VIATRHLTEAIGYRKLDRAVGTASAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=697006 NDY25_RS08575 WP_168959575.1 1930011..1931531(+) (comM) [Xanthomonas hortorum pv. pelargonii strain OSU493]
ATGAGTCTGGCGCTGGTGCACAGCCGTGCCCGCGTGGGGGTGCATGCGCCTGAGGTCCGGGTGGAAGTGCATCTCTCCGG
CGGTCTTCCCTCCACCCAGATCGTGGGCCTGCCCGAGGCTGCAGTGCGCGAATCGCGCGAACGCGTGCGTGCCGCGCTGC
TGTGCGCACAGTTCGAATTCCCGGCACGGCGCATCACCATCAATCTGGCGCCGGCCGATTTGCCCAAGGAAGGCGGCCGC
TTCGACCTGCCAATCGCACTCGGCATTCTGGCCGCCAGCGGTCAGATCGACCGCCAGGCCTTGGCCGAGTACGAATTTCT
CGGCGAACTCGCCCTGACCGGCGAGTTGCGCGGTGTCGATGGCGTGCTGCCCGCCGCCCTGGCAGCCGCGCAGGCCGGCC
GTCGCCTGATCGTGCCGCTGGCCAACGGTGCCGAGGCCGCCATCGCCGGCCACGTCGAAGCCTTCACCGCGCGCACGCTG
CTGGAAGTCTGTGCCACGCTCAATGGCACCCAAAAGGCGCCCGCCGCCGAACTGGCGGTGCAGGCGCTCGGCGCGCGCGC
CCTGCCCGACATGGCCGACGTGCGCGGCCAACCGCATGCCCGCCGCGCGCTGGAAATTGCCGCAGCCGGCGGTCACCATT
TATTGCTGGTCGGTAGCCCTGGCTGCGGCAAGACCTTGCTCGCCTCGCGCCTGCCCGGCCTGCTGCCGGAAGCCAGCGAG
GCCGAGGCGCTGGAAACCGCCGCCATTACCTCCATCAGCGGTCGCGGACTGGATCTTGTGCGCTGGCGGCAACGCCCCTA
TCGGGCTCCGCACCACACCGCCAGCGCGGTCGCCTTGGTTGGCGGTGGCACACATCCACGCCCCGGCGAGATCTCGCTGG
CCCACAACGGCGTGTTGTTTCTGGACGAGTTGCCCGAGTGGCAACGCCAAACGCTGGAAGTGCTGCGCGAGCCGCTGGAA
TCGGGCATGGTCACCATCTCGCGCGCCGCGCGCAGTGTGGATTTCCCGGCAAGATTCCAATTGGTCGCGGCGATGAATCC
CTGTCCGTGCGGGTGGGCCGGCGATAGCAGCGGGCGTTGCCGTTGCAGCAGCGACACCATCGGCCGTTATCGCAGCCGGA
TCTCCGGGCCGCTGCTGGACCGGATCGATCTGCATGTCGAGGTCCCGCGCCTGCCGCCGCAGGCCCTGCGCAGCGGCAAC
GTCGGCGAGGACAGCGCCAGCGTGCGCACCCGCGTGGTCGCGGCACGCGTGCGGCAACTGGCACGTGCCGGCGTGCCCAA
CGCACAACTGGACCAAGCACAAACCGATCATCACTGCCGCCTGCAACACGACGATCAGCTGTTGCTGGAACGCGCTATCG
AACACCTGCAGCTGTCCGCACGCTCGATGCATCGCATCCTGCGCGTGGCACGCACCATCGCCGATCTCGACGACAGCGCG
GTCATTGCAACGCGTCATCTGACCGAAGCGATCGGCTACCGCAAACTGGATCGCGCGGTGGGCACGGCAAGCGCAGCCTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.522

100

0.565
  comM Haemophilus influenzae Rd KW20

55.842

99.802

0.557
  comM Glaesserella parasuis strain SC1401

54.851

99.802

0.547
  comM Vibrio campbellii strain DS40M4

54.15

100

0.542
  comM Legionella pneumophila str. Paris

52.495

99.012

0.52
  comM Legionella pneumophila strain ERS1305867

52.495

99.012

0.52
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.457

100

0.466