Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   NDQ69_RS11070 Genome accession   NZ_CP098548
Coordinates   2104083..2104574 (-) Length   163 a.a.
NCBI ID   WP_260283796.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 9343     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2099083..2109574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDQ69_RS11050 (NDQ69_10995) msrAB 2099473..2101041 (-) 1569 WP_003694393.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  NDQ69_RS11055 (NDQ69_11000) pilA 2101187..2102440 (+) 1254 WP_003687004.1 signal recognition particle-docking protein FtsY Machinery gene
  NDQ69_RS11060 (NDQ69_11005) - 2102886..2103587 (-) 702 WP_406946886.1 opacity family porin -
  NDQ69_RS11065 (NDQ69_11905) - 2103588..2103803 (+) 216 WP_263589017.1 hypothetical protein -
  NDQ69_RS11070 (NDQ69_11010) pilE 2104083..2104574 (-) 492 WP_260283796.1 pilin Machinery gene
  NDQ69_RS11075 (NDQ69_11015) - 2104943..2105086 (-) 144 WP_012503975.1 hypothetical protein -
  NDQ69_RS11080 (NDQ69_11020) - 2105191..2105271 (-) 81 Protein_2141 pilin -
  NDQ69_RS11085 (NDQ69_11025) - 2105389..2105793 (-) 405 Protein_2142 pilin -
  NDQ69_RS11090 (NDQ69_11030) - 2106322..2106735 (-) 414 Protein_2143 pilin -
  NDQ69_RS11095 (NDQ69_11035) lpxC 2106835..2107758 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  NDQ69_RS11915 - 2108250..2108972 (-) 723 WP_374110874.1 pilin -
  NDQ69_RS11115 (NDQ69_11055) - 2108998..2109213 (-) 216 Protein_2146 pilin -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17792.20 Da        Isoelectric Point: 7.1341

>NTDB_id=696994 NDQ69_RS11070 WP_260283796.1 2104083..2104574(-) (pilE) [Neisseria gonorrhoeae strain 9343]
MNTLQKGFTLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQKSAVTEYYLNHGEWPENNDKAGVASSSSIK
GKYVKEVEVKNGVVTAKMKSDGVNKEIQGKRLSLWAKRQDGSVKWFCGQPVKRDDNGNVTADDTDAIETKHLPSTCRDTS
MTN

Nucleotide


Download         Length: 492 bp        

>NTDB_id=696994 NDQ69_RS11070 WP_260283796.1 2104083..2104574(-) (pilE) [Neisseria gonorrhoeae strain 9343]
ATGAATACCCTTCAAAAAGGCTTTACCCTTATCGAGCTGATGATTGTGATCGCCATCGTCGGCATTTTGGCGGCAGTCGC
CCTTCCCGCCTACCAAGACTACACCGCCCGCGCGCAAGTTTCCGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCG
TTACCGAGTATTACCTGAATCACGGCGAATGGCCGGAAAACAACGACAAGGCCGGCGTGGCATCTTCTTCATCAATCAAA
GGCAAATATGTTAAAGAGGTTGAAGTTAAAAACGGCGTCGTCACCGCCAAAATGAAATCAGACGGCGTAAACAAAGAAAT
CCAAGGCAAAAGACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTAAGCGCG
ACGACAACGGCAACGTTACCGCCGACGACACCGACGCCATCGAAACCAAGCACCTGCCGTCAACCTGCCGCGATACGTCA
ATGACAAATTAG

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(36-157)

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

82.609

98.773

0.816
  pilE Neisseria gonorrhoeae MS11

81.875

98.16

0.804
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

34.211

100

0.399
  comP Acinetobacter baylyi ADP1

37.805

100

0.38
  pilA/pilA1 Eikenella corrodens VA1

35.088

100

0.368