Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   NDQ67_RS11085 Genome accession   NZ_CP098546
Coordinates   2107076..2107573 (-) Length   165 a.a.
NCBI ID   WP_263584047.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 9126     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2102076..2112573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDQ67_RS11070 (NDQ67_11035) msrAB 2102624..2104192 (-) 1569 WP_003694393.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  NDQ67_RS11075 (NDQ67_11040) pilA 2104338..2105591 (+) 1254 WP_003687004.1 signal recognition particle-docking protein FtsY Machinery gene
  NDQ67_RS11080 (NDQ67_11045) - 2105862..2106563 (-) 702 WP_260291058.1 opacity family porin -
  NDQ67_RS11085 (NDQ67_11055) pilE 2107076..2107573 (-) 498 WP_263584047.1 pilin Machinery gene
  NDQ67_RS11090 (NDQ67_11060) - 2107942..2108351 (-) 410 Protein_2137 pilin -
  NDQ67_RS11095 (NDQ67_11065) - 2108351..2108740 (-) 390 Protein_2138 pilin -
  NDQ67_RS11100 (NDQ67_11070) - 2109277..2109705 (-) 429 Protein_2139 pilin -
  NDQ67_RS11105 (NDQ67_11075) lpxC 2109805..2110728 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  NDQ67_RS11935 - 2111230..2111946 (-) 717 WP_374110971.1 pilin -
  NDQ67_RS11125 (NDQ67_11095) - 2111972..2112178 (-) 207 Protein_2142 pilin -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 17914.26 Da        Isoelectric Point: 5.9193

>NTDB_id=696946 NDQ67_RS11085 WP_263584047.1 2107076..2107573(-) (pilE) [Neisseria gonorrhoeae strain 9126]
MNTLQKGFTLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQKSAVTEYYLNNGEWPENNDSAGVASSSSIK
GKYVKEVEVKNGVVTATMNSSNVNKEIKDKKLSLWAKRQDGSVKWFCGQPVTRADKDNDTVANDVTNAIETKHLPSTCRD
PFSAS

Nucleotide


Download         Length: 498 bp        

>NTDB_id=696946 NDQ67_RS11085 WP_263584047.1 2107076..2107573(-) (pilE) [Neisseria gonorrhoeae strain 9126]
ATGAATACCCTTCAAAAAGGCTTTACCCTTATCGAGCTGATGATTGTGATCGCCATCGTCGGCATTTTGGCGGCAGTCGC
CCTTCCCGCCTACCAAGACTACACCGCCCGCGCGCAAGTTTCCGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCG
TTACCGAGTATTACCTGAATAACGGCGAATGGCCGGAAAACAACGACTCTGCCGGCGTGGCATCTTCTTCATCAATCAAA
GGCAAATATGTTAAGGAAGTTGAAGTCAAAAACGGCGTCGTTACCGCCACAATGAATTCAAGCAACGTAAACAAAGAAAT
CAAAGACAAAAAACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCG
CCGACAAAGACAACGACACCGTTGCCAACGACGTCACCAACGCCATCGAAACCAAGCACCTGCCGTCAACCTGCCGCGAC
CCGTTCTCTGCTAGCTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)

Pilin (bacterial filament) (Pilin)

(36-159)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

83.03

100

0.83
  pilE Neisseria gonorrhoeae MS11

82.927

99.394

0.824
  comP Acinetobacter baylyi ADP1

39.759

100

0.4
  pilA/pilA1 Eikenella corrodens VA1

36.471

100

0.376
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

32.979

100

0.376