Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   NDQ66_RS09505 Genome accession   NZ_CP098532
Coordinates   1792105..1792617 (+) Length   170 a.a.
NCBI ID   WP_260247661.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10537     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1787105..1797617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDQ66_RS09470 (NDQ66_09390) - 1787742..1788118 (-) 377 Protein_1829 transposase -
  NDQ66_RS12160 - 1788427..1788865 (-) 439 Protein_1830 hypothetical protein -
  NDQ66_RS09485 (NDQ66_09405) - 1789126..1789497 (+) 372 Protein_1831 pilin -
  NDQ66_RS09495 (NDQ66_09415) lpxC 1790211..1791134 (+) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  NDQ66_RS09500 (NDQ66_09420) - 1791262..1791734 (+) 473 Protein_1833 pilin -
  NDQ66_RS09505 (NDQ66_09425) pilE 1792105..1792617 (+) 513 WP_260247661.1 pilin Machinery gene
  NDQ66_RS09510 (NDQ66_09430) - 1793223..1793936 (+) 714 WP_263587369.1 opacity family porin -
  NDQ66_RS09515 (NDQ66_09435) - 1793950..1794141 (+) 192 WP_172762639.1 hypothetical protein -
  NDQ66_RS09520 (NDQ66_09440) pilA 1794207..1795460 (-) 1254 WP_047919725.1 signal recognition particle-docking protein FtsY Machinery gene
  NDQ66_RS09525 (NDQ66_09445) msrAB 1795606..1797174 (+) 1569 WP_260247250.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18269.75 Da        Isoelectric Point: 8.4453

>NTDB_id=696656 NDQ66_RS09505 WP_260247661.1 1792105..1792617(+) (pilE) [Neisseria gonorrhoeae strain 10537]
MNTLQKGFTLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQKSAVTEYYLNHGKWPENNDSAGVASASDIK
GKYVQSVTVANGVVTAQMKSDGVNKEIKGKKLSLWAKRENGSVKWFCGQPVKRDNADDPNDAVKADAADKDKIETKHLPS
TCRDKSSAGT

Nucleotide


Download         Length: 513 bp        

>NTDB_id=696656 NDQ66_RS09505 WP_260247661.1 1792105..1792617(+) (pilE) [Neisseria gonorrhoeae strain 10537]
ATGAATACCCTTCAAAAAGGCTTTACCCTTATCGAGCTGATGATTGTGATCGCCATCGTCGGCATTTTGGCGGCAGTCGC
CCTTCCCGCCTACCAAGACTACACCGCCCGCGCGCAAGTTTCCGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCG
TTACCGAGTATTACCTGAATCACGGCAAATGGCCGGAAAACAACGACTCTGCCGGCGTGGCATCCGCTTCAGACATCAAA
GGCAAATATGTTCAAAGCGTTACGGTCGCAAACGGCGTCGTTACCGCCCAAATGAAATCAGACGGCGTAAACAAAGAAAT
CAAAGGCAAAAAACTCTCCCTGTGGGCCAAGCGTGAAAACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTAAGCGCG
ACAACGCCGACGACCCCAACGACGCCGTCAAAGCCGACGCCGCCGACAAAGACAAAATCGAAACCAAGCACCTGCCGTCA
ACCTGCCGCGATAAATCATCTGCCGGTACGTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(36-163)

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

83.929

98.824

0.829
  pilE Neisseria gonorrhoeae strain FA1090

81.548

98.824

0.806
  pilA/pilA1 Eikenella corrodens VA1

36.782

100

0.376
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

33.508

100

0.376
  comP Acinetobacter baylyi ADP1

37.059

100

0.371