Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NDQ71_RS11080 Genome accession   NZ_CP098523
Coordinates   2343951..2345465 (-) Length   504 a.a.
NCBI ID   WP_301561634.1    Uniprot ID   -
Organism   Pseudoalteromonas sp. KG3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2338951..2350465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDQ71_RS11065 (NDQ71_11050) - 2339343..2340446 (-) 1104 WP_192540620.1 CNNM domain-containing protein -
  NDQ71_RS11070 (NDQ71_11055) - 2340601..2343096 (+) 2496 WP_301561633.1 prolyl oligopeptidase family serine peptidase -
  NDQ71_RS11075 (NDQ71_11060) - 2343250..2343954 (+) 705 WP_064667742.1 response regulator transcription factor -
  NDQ71_RS11080 (NDQ71_11065) comM 2343951..2345465 (-) 1515 WP_301561634.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NDQ71_RS11085 (NDQ71_11070) - 2345499..2346113 (-) 615 WP_064667740.1 trimeric intracellular cation channel family protein -
  NDQ71_RS11090 (NDQ71_11075) dinF 2346379..2347713 (-) 1335 WP_084448230.1 MATE family efflux transporter DinF -
  NDQ71_RS11095 (NDQ71_11080) - 2347690..2348721 (+) 1032 WP_301561635.1 polysaccharide deacetylase family protein -
  NDQ71_RS11100 (NDQ71_11085) - 2348718..2349749 (-) 1032 WP_064667736.1 chemotaxis response regulator protein-glutamate methylesterase -
  NDQ71_RS11105 (NDQ71_11090) cheD 2349760..2350377 (-) 618 WP_064667735.1 chemoreceptor glutamine deamidase CheD -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54972.04 Da        Isoelectric Point: 7.4838

>NTDB_id=696607 NDQ71_RS11080 WP_301561634.1 2343951..2345465(-) (comM) [Pseudoalteromonas sp. KG3]
MSLARIYSRAQVGIQAPEVIVEVHLGNGLPAFHIVGLPEASVKEAKDRVRSALENSKFGFPDQRITVNLAPADLPKDGGR
FDLAIAIGILVASGQIVCTDIEKYEFYGELALNGEVRGVNAILPSVLAAKAQGRCCFLPLVNDSLASLVNGVERKAISSI
QDVWSDLLNQQPLPLNISYPEQQHSGVEFLIDLSDVKGQAGAKRVLEIAAAGGHNLLFLGPPGTGKSMLAQRMPTIMPGM
SDDEALATAALYSIIGQSVDLTNWRKRPFRNPHHTCSAVALVGGSSNPKPGEISLAHNGVLFLDELPEFERKVLDSLREP
METGTVTISRAARQMEFPAQFQLIAALNPSPTGCHNDKRATPDQVMRYLSRVSGPFIDRIDLQIELPRLNSTQLQSTDAE
EISAQVKARVEAAYNLQLNRQGKVNARLNNKEMSVHCALAPAELQFLAKASEKLALSPRSYHRVIKVARTISDLKGQTHI
TLSELKEALNYRAFERLLAQLSQY

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=696607 NDQ71_RS11080 WP_301561634.1 2343951..2345465(-) (comM) [Pseudoalteromonas sp. KG3]
ATGTCATTAGCTCGGATTTATTCGCGTGCCCAAGTGGGTATTCAAGCACCTGAAGTGATCGTTGAAGTACATTTAGGCAA
TGGTTTACCGGCATTTCATATTGTTGGCTTGCCTGAAGCGTCTGTGAAAGAAGCCAAAGATAGGGTTCGCAGTGCATTAG
AAAACTCTAAATTTGGCTTTCCTGATCAACGTATAACTGTAAATTTAGCGCCTGCCGATTTGCCTAAAGATGGCGGGCGT
TTTGATCTTGCAATTGCGATTGGTATTTTAGTGGCATCAGGGCAAATCGTTTGCACAGATATTGAAAAGTATGAATTTTA
CGGCGAATTGGCTCTTAACGGCGAAGTACGTGGCGTGAATGCGATACTTCCTTCGGTGTTGGCTGCTAAAGCACAAGGGC
GTTGCTGCTTTTTACCATTAGTCAATGATAGTTTAGCAAGCTTGGTGAATGGTGTTGAGCGTAAAGCTATCTCTTCTATT
CAAGATGTGTGGAGTGATTTACTAAATCAACAGCCGTTACCGCTTAATATTAGCTACCCTGAACAGCAGCATAGCGGTGT
TGAATTTTTAATTGATTTAAGTGATGTAAAAGGCCAAGCAGGTGCCAAAAGAGTGCTAGAGATCGCTGCCGCTGGTGGCC
ATAATTTATTATTTTTAGGACCTCCAGGAACTGGTAAGTCGATGTTGGCGCAACGTATGCCAACCATAATGCCTGGCATG
TCTGATGATGAAGCGCTGGCTACCGCGGCGTTGTATTCGATTATAGGGCAAAGTGTTGATTTAACTAATTGGCGCAAACG
CCCCTTTCGTAATCCTCATCACACTTGCTCTGCTGTGGCATTAGTTGGCGGCTCTTCAAATCCAAAACCAGGGGAAATTT
CCTTGGCGCACAATGGTGTTCTGTTTCTTGATGAATTACCGGAGTTTGAGCGCAAAGTGCTTGATTCATTGCGCGAACCA
ATGGAAACCGGCACCGTCACTATCTCAAGAGCGGCGCGGCAAATGGAGTTCCCAGCTCAATTCCAACTCATAGCGGCACT
CAATCCCAGCCCCACTGGCTGCCACAATGATAAACGCGCAACGCCAGATCAAGTAATGCGTTATTTATCACGGGTATCTG
GGCCCTTTATTGACCGCATTGATCTGCAAATAGAGCTACCACGGTTAAACAGCACACAGCTGCAAAGTACCGACGCTGAA
GAAATTAGTGCGCAAGTAAAAGCGCGTGTTGAGGCGGCATATAATTTACAACTAAATCGGCAAGGTAAAGTGAATGCACG
GCTTAATAATAAAGAAATGAGTGTGCATTGTGCGCTGGCACCCGCCGAATTACAGTTTTTAGCCAAAGCCAGTGAGAAGT
TAGCCCTGTCACCACGCTCTTATCATCGAGTCATTAAAGTTGCGCGCACGATAAGCGATTTAAAAGGGCAAACACATATT
ACCCTGAGCGAATTAAAAGAGGCGTTGAATTATCGCGCATTTGAGCGGTTACTAGCGCAATTGAGTCAATACTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-393)

Subunit ChlI of Mg-chelatase (ChlI)

(21-139)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.917

100

0.571
  comM Haemophilus influenzae Rd KW20

54.599

100

0.554
  comM Glaesserella parasuis strain SC1401

54.528

100

0.55
  comM Vibrio campbellii strain DS40M4

53.663

100

0.538
  comM Legionella pneumophila str. Paris

48.805

99.603

0.486
  comM Legionella pneumophila strain ERS1305867

48.805

99.603

0.486
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.083

100

0.433