Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NDN18_RS18290 Genome accession   NZ_CP098521
Coordinates   3809452..3810939 (+) Length   495 a.a.
NCBI ID   WP_000010467.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Cl107     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3804452..3815939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDN18_RS18265 (NDN18_18265) ribD 3805368..3806453 (-) 1086 WP_001292499.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  NDN18_RS18270 (NDN18_18270) nrdR 3806469..3806927 (-) 459 WP_000543541.1 transcriptional regulator NrdR -
  NDN18_RS18275 (NDN18_18275) - 3807086..3808483 (-) 1398 WP_000738520.1 ammonium transporter -
  NDN18_RS18280 (NDN18_18280) glnK 3808541..3808879 (-) 339 WP_000780327.1 P-II family nitrogen regulator -
  NDN18_RS18285 (NDN18_18285) - 3809159..3809386 (+) 228 WP_000894500.1 accessory factor UbiK family protein -
  NDN18_RS18290 (NDN18_18290) comM 3809452..3810939 (+) 1488 WP_000010467.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NDN18_RS18295 (NDN18_18295) - 3810954..3812388 (-) 1435 Protein_3568 PLP-dependent aminotransferase family protein -
  NDN18_RS18300 (NDN18_18300) - 3812500..3813276 (+) 777 WP_000845034.1 aldolase -
  NDN18_RS18305 (NDN18_18305) - 3813292..3814170 (+) 879 WP_000772980.1 dihydrodipicolinate synthase family protein -
  NDN18_RS18310 (NDN18_18310) - 3814213..3815025 (-) 813 WP_000975212.1 TorF family putative porin -
  NDN18_RS18315 (NDN18_18315) - 3815082..3815252 (-) 171 WP_002009550.1 hypothetical protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54554.43 Da        Isoelectric Point: 7.2551

>NTDB_id=696592 NDN18_RS18290 WP_000010467.1 3809452..3810939(+) (comM) [Acinetobacter baumannii strain Cl107]
MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPENCTEDFEFIGELALDGHVRPVSGALTLAMACQQAQHKIVLPVDNSQDISHLPNLECYPVNHL
KEVCEHFLGTQKLAHAQQSAYSNEMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLST
QETLEVASIYSISNTPHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE
IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPAE
DSTTVRQRVIYAYEQQMQRQDCLNQALSPKQLEQHAVLDSTSQRMIEMAQQRLNLSARAYHRVLRVARTIADLAQSEVIQ
SPHLTEALSYRGNHS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=696592 NDN18_RS18290 WP_000010467.1 3809452..3810939(+) (comM) [Acinetobacter baumannii strain Cl107]
ATGTCTTTTTCTAAAATTTATACTCGGGGACTTTTAGGATTACATGCGCCTCTCATTGAGGTTGAGGTGCATGTGAGTCA
AGGCTTACCCTCTCTGACTATTGTAGGCTTAGCTGAAGCAGCCGTTAGGGAAAGTAAGGATAGGGTTCGCTCAGCTATTA
TTAACAGTGGATTTCAATTTCCAACTAAGCGGCTGACCATTAACCTTGCTCCTGCAGATTTGCCCAAAGATGGTTCACGG
CTAGATTTACCAATTGCTTTAGGCATCTTAATTGCCTCTGGTCAACTTCCGGAAAACTGCACAGAAGACTTTGAATTTAT
TGGAGAGTTAGCTCTAGACGGTCATGTAAGACCTGTGTCAGGCGCCTTAACTTTAGCAATGGCATGCCAGCAAGCTCAGC
ATAAAATCGTTTTACCAGTCGATAATAGCCAAGATATTAGCCATTTACCTAATCTTGAGTGTTATCCGGTTAACCATTTA
AAAGAGGTGTGCGAGCACTTTTTAGGCACACAAAAGCTAGCTCATGCGCAGCAAAGTGCCTATTCAAATGAAATGCCCTA
TAAATTTGATCTTGCAGATGTTAAAGGTCAGCTACGCCCACGGCGTGCACTAGAAATTGCTGCCGCTGGGGGACATTCCC
TGCTCTTTAAAGGACCACCAGGCACAGGTAAAACTTTATTGGCCTCACGCCTGCCTTCCATTTTACCGCCACTTTCTACT
CAAGAAACTCTTGAAGTTGCAAGTATTTATTCTATTTCAAATACACCACATACTTTTGGGCAGCGTCCATTTCGCGCGCC
CCACCATACAGCATCAGCAATTGCACTGGTTGGGGGCGGTTCACACCCTAAACCGGGTGAAATTACTTTATCTCATTTAG
GTGTTCTATTTTTAGATGAACTCCCCGAGTTTGACAGAAAAGTTCTAGAAGTCTTACGCCAACCGCTTGAGTCAAAAGAA
ATCATTATTTCACGAGCAGCTCGGCAAATTACCTACCCTGCAAACTTTCAGCTCATTGCAGCAATGAATCCTTGTCCATG
TGGGTATGCATTTAATCAAGATAGCCGTTGTCAGTGTTCTCCAGAAAGCATTAAGCGCTATCAAAATCGTATATCGGGAC
CGTTACTCGATCGTATCGATTTACATATTGATGTACCGCCATTAAAAGCTCAAGAACTGCAAGACCCAACACCTGCAGAA
GATTCTACAACTGTACGACAACGTGTGATTTATGCTTATGAACAACAAATGCAAAGACAGGATTGTTTGAATCAGGCGCT
CTCACCCAAACAACTGGAACAACATGCCGTTCTCGATAGTACTTCACAGCGAATGATTGAAATGGCTCAGCAACGTTTAA
ATTTATCTGCTCGAGCTTATCATCGCGTTTTACGGGTTGCTCGTACTATTGCCGATTTGGCTCAAAGTGAGGTCATTCAA
AGTCCTCATCTTACAGAAGCACTCTCTTATCGAGGTAATCATTCTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.21

100

0.513
  comM Glaesserella parasuis strain SC1401

50.501

100

0.509
  comM Legionella pneumophila strain ERS1305867

49.501

100

0.501
  comM Legionella pneumophila str. Paris

49.501

100

0.501
  comM Haemophilus influenzae Rd KW20

49.499

100

0.499
  comM Vibrio campbellii strain DS40M4

48.485

100

0.485
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.4

100

0.469