Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   NDN12_RS01430 Genome accession   NZ_CP098479
Coordinates   301693..303828 (+) Length   711 a.a.
NCBI ID   WP_251111463.1    Uniprot ID   -
Organism   Acinetobacter sp. C26G     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 296693..308828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDN12_RS01410 (NDN12_01410) comM 298662..299720 (+) 1059 WP_004803903.1 pilus assembly protein PilM Machinery gene
  NDN12_RS01415 (NDN12_01415) pilN 299720..300370 (+) 651 WP_251110567.1 PilN domain-containing protein Machinery gene
  NDN12_RS01420 (NDN12_01420) comO 300367..301101 (+) 735 WP_251110568.1 type 4a pilus biogenesis protein PilO Machinery gene
  NDN12_RS01425 (NDN12_01425) pilP 301104..301631 (+) 528 WP_167248608.1 pilus assembly protein PilP Machinery gene
  NDN12_RS01430 (NDN12_01430) pilQ 301693..303828 (+) 2136 WP_251111463.1 type IV pilus secretin PilQ family protein Machinery gene
  NDN12_RS01435 (NDN12_01435) aroK 303848..304408 (+) 561 WP_251110569.1 shikimate kinase AroK -
  NDN12_RS01440 (NDN12_01440) aroB 304429..305511 (+) 1083 WP_167248609.1 3-dehydroquinate synthase -
  NDN12_RS01445 (NDN12_01445) - 305531..306397 (+) 867 WP_251110570.1 hypothetical protein -

Sequence

Protein


Download         Length: 711 a.a.        Molecular weight: 77187.71 Da        Isoelectric Point: 6.0032

>NTDB_id=696101 NDN12_RS01430 WP_251111463.1 301693..303828(+) (pilQ) [Acinetobacter sp. C26G]
MNHAFRQFSMGAVAIAVMQVASAQVSMTNIVPMSLADQGTEIRVMFDGLPPQPQAYQLEQPSRLILDFDKAQQSLKQNSI
PVSTAEASSIDIASDDQRSRVIVNLKDAGAFTTRVEGNTFVLKINSAKPATINTPAAAVRQVQQGVSNIGFQRGNQAEGL
VVIDLLGNNTPVDVQQQGSKIVVRTAGNKIPTHLARRLNTNDFATPVASIDAYNDKGNGVITIQSAGSYEYMAYQAENKL
TISLKRPEDKSPTKAKSQTYTGNKISLDFQDIEVRRVLQLLADFTGINMVAADTVQGNITLRLKDVPWDQALDIVLKTKN
LDKRRNGNVIWIAPVSELIKAEEEEAKALAQSVKLAPIQTEYIKLSYAKAADIEKLITQGKNANTSNIGGSGSISNDTLV
GGLLSPRGTVSTDPRTNTLIVNDTSQKIDQIRKMVDLLDVSVKQVMIEARIVSASTDFTREMGVKWGILSQGITNNNDLL
VGGSDTTLWNLRKPEKDGDTGGWKYEIERPDNLNVDLGAVTPGASRIAFGLISLSDFMLDLELSAVQADGYGEVISTPKV
MTADKQPAKIESGKKIPYTSSSGGGANAVPKTEFIDATLSLDVTPSITPEGKVMMKLNITKDSQSTPTPTGQLTINKNQI
DTNVLVDNGETVVLGGIFEQENISSQVKVPFLGDLPYIGRLFRRDMKTDNKRELLIFVTPRIVNDTLTRNH

Nucleotide


Download         Length: 2136 bp        

>NTDB_id=696101 NDN12_RS01430 WP_251111463.1 301693..303828(+) (pilQ) [Acinetobacter sp. C26G]
ATGAATCATGCATTCCGTCAATTTTCTATGGGTGCGGTCGCTATCGCAGTGATGCAAGTTGCATCGGCGCAAGTGAGTAT
GACCAATATTGTACCAATGAGTTTGGCAGATCAAGGCACGGAAATTCGTGTGATGTTTGATGGTCTACCGCCACAACCAC
AGGCATATCAGCTAGAGCAACCTTCTCGTTTGATTTTGGATTTTGATAAAGCTCAGCAGAGCCTCAAGCAAAACTCGATT
CCAGTATCAACTGCTGAAGCGAGCTCGATCGACATTGCATCAGATGATCAACGCTCCCGTGTGATTGTGAATTTAAAAGA
TGCGGGTGCCTTTACAACACGTGTTGAAGGCAATACCTTTGTTCTTAAAATTAACTCAGCCAAACCTGCTACTATAAATA
CACCTGCTGCCGCTGTTCGACAGGTACAACAAGGTGTTTCCAATATTGGTTTCCAAAGAGGTAATCAAGCTGAAGGCTTG
GTTGTGATTGATTTGTTGGGTAATAACACCCCAGTGGATGTGCAGCAGCAAGGCAGCAAGATTGTGGTGCGTACTGCTGG
TAATAAAATCCCAACACATTTAGCGCGTCGTTTAAATACCAATGATTTTGCGACACCTGTCGCGAGTATTGATGCTTATA
ATGATAAGGGGAATGGTGTCATTACTATTCAATCTGCGGGTAGCTATGAATATATGGCATATCAAGCGGAAAATAAGTTG
ACGATTAGCTTGAAACGTCCTGAAGATAAGTCTCCGACTAAAGCTAAGTCGCAAACATATACGGGTAATAAAATCTCTTT
AGATTTCCAAGATATTGAAGTACGTCGTGTACTGCAACTATTGGCGGATTTTACTGGCATCAATATGGTTGCAGCAGATA
CCGTTCAAGGCAATATCACTTTGCGCCTAAAAGATGTACCTTGGGATCAGGCATTAGATATCGTCTTAAAAACTAAAAAT
TTGGATAAACGCCGTAATGGTAATGTGATCTGGATTGCACCTGTTTCTGAATTGATTAAGGCTGAAGAAGAGGAGGCAAA
AGCGTTAGCACAGAGCGTTAAACTTGCACCGATTCAAACAGAATATATTAAATTAAGCTATGCAAAAGCCGCTGATATTG
AAAAGCTCATTACGCAAGGTAAAAATGCAAATACAAGTAATATTGGTGGTTCAGGATCAATAAGTAATGATACTTTGGTT
GGTGGTTTGTTAAGCCCAAGAGGAACTGTATCGACTGATCCGCGAACTAATACCTTAATTGTAAATGACACTTCACAAAA
GATTGATCAGATCCGGAAGATGGTTGATTTACTCGATGTTTCAGTCAAGCAAGTGATGATTGAAGCGCGTATTGTCAGTG
CTAGTACTGATTTTACCCGAGAAATGGGAGTCAAGTGGGGAATTTTATCGCAAGGGATTACCAATAATAACGACTTATTA
GTGGGTGGTAGTGATACTACTTTATGGAACTTACGTAAACCAGAGAAAGATGGTGATACTGGTGGTTGGAAATATGAAAT
TGAACGACCAGATAACTTAAATGTGGATTTAGGTGCTGTTACACCAGGCGCAAGTCGTATTGCTTTTGGTTTGATTAGTT
TATCTGATTTTATGTTGGATTTAGAGTTATCTGCAGTTCAAGCGGATGGTTATGGTGAGGTGATTTCAACACCAAAAGTT
ATGACTGCTGATAAGCAACCAGCAAAAATTGAATCTGGTAAGAAAATTCCTTATACCTCTTCTTCTGGTGGTGGTGCAAA
TGCAGTACCTAAAACAGAATTTATTGATGCAACTTTGAGTCTAGATGTCACACCAAGCATTACCCCTGAGGGTAAGGTCA
TGATGAAGCTGAACATTACCAAAGATTCACAAAGTACACCTACACCAACAGGACAGCTCACCATTAATAAAAATCAAATT
GATACAAATGTATTGGTGGATAATGGTGAAACAGTGGTACTCGGTGGAATTTTTGAACAGGAAAATATCAGCTCTCAAGT
TAAAGTGCCTTTCTTGGGGGATTTACCATATATCGGGCGATTATTCCGTAGAGATATGAAAACCGATAATAAACGTGAAC
TGCTTATTTTTGTGACGCCGAGAATTGTTAATGACACTTTGACTAGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(545-703)

AMIN domain (AMIN)

(37-120)

Bacterial type II/III secretion system short domain (Secretin_N)

(361-444)

Secretin and TonB N terminus short domain (STN)

(292-334)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

75.344

100

0.769
  pilQ Acinetobacter baumannii strain A118

75.207

100

0.768
  comQ Acinetobacter baylyi ADP1

72.045

100

0.729
  pilQ Pseudomonas aeruginosa PAK

40.054

100

0.413