Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   NDN12_RS01415 Genome accession   NZ_CP098479
Coordinates   299720..300370 (+) Length   216 a.a.
NCBI ID   WP_251110567.1    Uniprot ID   -
Organism   Acinetobacter sp. C26G     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 294720..305370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDN12_RS01400 (NDN12_01400) - 295065..295883 (+) 819 WP_251110565.1 putative RNA methyltransferase -
  NDN12_RS01405 (NDN12_01405) ponA 295899..298499 (-) 2601 WP_251110566.1 penicillin-binding protein PBP1a -
  NDN12_RS01410 (NDN12_01410) comM 298662..299720 (+) 1059 WP_004803903.1 pilus assembly protein PilM Machinery gene
  NDN12_RS01415 (NDN12_01415) pilN 299720..300370 (+) 651 WP_251110567.1 PilN domain-containing protein Machinery gene
  NDN12_RS01420 (NDN12_01420) comO 300367..301101 (+) 735 WP_251110568.1 type 4a pilus biogenesis protein PilO Machinery gene
  NDN12_RS01425 (NDN12_01425) pilP 301104..301631 (+) 528 WP_167248608.1 pilus assembly protein PilP Machinery gene
  NDN12_RS01430 (NDN12_01430) pilQ 301693..303828 (+) 2136 WP_251111463.1 type IV pilus secretin PilQ family protein Machinery gene
  NDN12_RS01435 (NDN12_01435) aroK 303848..304408 (+) 561 WP_251110569.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 24007.37 Da        Isoelectric Point: 6.0168

>NTDB_id=696098 NDN12_RS01415 WP_251110567.1 299720..300370(+) (pilN) [Acinetobacter sp. C26G]
MAKINLLPWRDELREQRKKQFVAFCVGVAALGVASVFSGWMYFDHKLNDQEQANQLIVSTNQNLDTQLKALDGLQERRNA
IIERMKLIQGLQGQRPVTVRLVDELVRVTPPTMYLTKFTRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
VDEDKNKEKTASSLVPRVEENYGSFVVTVDLGEIGTTAEAAPTSEAAASGVVGVAK

Nucleotide


Download         Length: 651 bp        

>NTDB_id=696098 NDN12_RS01415 WP_251110567.1 299720..300370(+) (pilN) [Acinetobacter sp. C26G]
ATGGCAAAGATTAACTTACTCCCTTGGCGTGATGAGCTAAGAGAACAAAGAAAGAAACAGTTTGTCGCATTTTGTGTTGG
GGTTGCTGCATTAGGGGTTGCATCGGTTTTTTCGGGGTGGATGTATTTTGATCACAAATTGAATGATCAAGAACAAGCCA
ATCAACTGATTGTCAGTACCAACCAAAATTTAGATACCCAGTTGAAAGCGCTTGATGGATTACAAGAACGACGTAATGCG
ATTATTGAGCGCATGAAACTGATTCAAGGTTTGCAAGGACAGCGGCCTGTTACTGTGCGTTTGGTTGATGAATTGGTTCG
AGTTACTCCTCCAACCATGTATTTAACCAAGTTTACGCGTACTGGGGATAAATTCACGATTGAAGGTAAAGCTGAAAGTC
CAAATACGGTGGCTGAACTTCTACGTAATTTAGAAGCTTCGCCTTGGTATCGTAATGCCTTTATGAATTCCTTCCTTGCT
GTGGATGAAGATAAAAATAAAGAAAAAACAGCAAGTTCTTTGGTGCCTCGTGTTGAGGAAAATTATGGAAGCTTTGTTGT
CACTGTGGATTTAGGTGAAATCGGGACAACTGCAGAAGCTGCACCAACGTCAGAAGCAGCGGCATCAGGGGTAGTCGGGG
TGGCAAAATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

76.606

100

0.773
  comN Acinetobacter baylyi ADP1

77.665

91.204

0.708