Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   NC853_RS11030 Genome accession   NZ_CP098468
Coordinates   2100602..2101108 (-) Length   168 a.a.
NCBI ID   WP_260240080.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10328     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2095602..2106108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NC853_RS11005 (NC853_10905) - 2095621..2096103 (+) 483 WP_003694396.1 CinA family protein -
  NC853_RS11010 (NC853_10910) msrAB 2096187..2097755 (-) 1569 WP_003694393.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  NC853_RS11015 (NC853_10915) pilA 2097901..2099154 (+) 1254 WP_003687004.1 signal recognition particle-docking protein FtsY Machinery gene
  NC853_RS11020 (NC853_10920) - 2099420..2100124 (-) 705 WP_229930297.1 opacity family porin -
  NC853_RS11025 (NC853_11715) - 2100109..2100240 (-) 132 WP_263584118.1 hypothetical protein -
  NC853_RS11030 (NC853_10925) pilE 2100602..2101108 (-) 507 WP_260240080.1 pilin Machinery gene
  NC853_RS11035 (NC853_10930) - 2101477..2101932 (-) 456 Protein_2127 pilin -
  NC853_RS11040 (NC853_10935) pilE 2102469..2102882 (-) 414 WP_229930411.1 pilin Machinery gene
  NC853_RS11045 (NC853_10940) lpxC 2102988..2103911 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  NC853_RS11055 (NC853_10950) - 2104403..2104759 (-) 357 Protein_2130 pilin -
  NC853_RS11060 (NC853_10955) - 2104800..2105015 (-) 216 Protein_2131 pilin -
  NC853_RS11065 (NC853_10960) - 2105388..2105519 (-) 132 WP_010356054.1 hypothetical protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18034.37 Da        Isoelectric Point: 5.7628

>NTDB_id=695904 NC853_RS11030 WP_260240080.1 2100602..2101108(-) (pilE) [Neisseria gonorrhoeae strain 10328]
MNTLQKGFTLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQKSAVTEYYLNHGIWPKDNTSAGVASASDIK
GKYVEKVEVNNGVVTATMASSNVNKEIKDKRLSLWAKRQDGSVKWFCGQPVTRADNGTDDDAVAKDDVNAIDTKHLPSTC
RDTSSAGT

Nucleotide


Download         Length: 507 bp        

>NTDB_id=695904 NC853_RS11030 WP_260240080.1 2100602..2101108(-) (pilE) [Neisseria gonorrhoeae strain 10328]
ATGAATACCCTTCAAAAAGGCTTTACCCTTATCGAGCTGATGATTGTGATCGCCATCGTCGGCATTTTGGCGGCAGTCGC
CCTTCCCGCCTACCAAGACTACACCGCCCGCGCGCAAGTTTCCGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCG
TCACCGAGTATTACCTGAATCACGGCATATGGCCGAAAGACAACACTTCTGCCGGCGTGGCATCCGCCTCCGACATCAAA
GGCAAATATGTTGAGAAAGTTGAAGTCAACAACGGCGTCGTTACCGCCACAATGGCTTCAAGCAACGTAAACAAAGAAAT
CAAAGACAAAAGACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCG
CCGACAACGGCACCGACGACGACGCCGTCGCCAAAGACGACGTCAACGCCATCGACACCAAGCACCTGCCGTCAACCTGC
CGCGATACGTCATCTGCCGGTACGTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(36-161)

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

88.554

98.81

0.875
  pilE Neisseria gonorrhoeae MS11

81.325

98.81

0.804
  pilA/pilA1 Eikenella corrodens VA1

36.047

100

0.369
  comP Acinetobacter baylyi ADP1

36.905

100

0.369