Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   NC853_RS11040 Genome accession   NZ_CP098468
Coordinates   2102469..2102882 (-) Length   137 a.a.
NCBI ID   WP_229930411.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10328     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2097469..2107882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NC853_RS11015 (NC853_10915) pilA 2097901..2099154 (+) 1254 WP_003687004.1 signal recognition particle-docking protein FtsY Machinery gene
  NC853_RS11020 (NC853_10920) - 2099420..2100124 (-) 705 WP_229930297.1 opacity family porin -
  NC853_RS11025 (NC853_11715) - 2100109..2100240 (-) 132 WP_263584118.1 hypothetical protein -
  NC853_RS11030 (NC853_10925) pilE 2100602..2101108 (-) 507 WP_260240080.1 pilin Machinery gene
  NC853_RS11035 (NC853_10930) - 2101477..2101932 (-) 456 Protein_2127 pilin -
  NC853_RS11040 (NC853_10935) pilE 2102469..2102882 (-) 414 WP_229930411.1 pilin Machinery gene
  NC853_RS11045 (NC853_10940) lpxC 2102988..2103911 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  NC853_RS11055 (NC853_10950) - 2104403..2104759 (-) 357 Protein_2130 pilin -
  NC853_RS11060 (NC853_10955) - 2104800..2105015 (-) 216 Protein_2131 pilin -
  NC853_RS11065 (NC853_10960) - 2105388..2105519 (-) 132 WP_010356054.1 hypothetical protein -
  NC853_RS11070 (NC853_10965) - 2105601..2106289 (-) 689 Protein_2133 SprT family zinc-dependent metalloprotease -
  NC853_RS11075 (NC853_10970) - 2106286..2107029 (-) 744 WP_003687014.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  NC853_RS11080 (NC853_10975) gmhB 2107059..2107622 (-) 564 WP_003687015.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 14901.76 Da        Isoelectric Point: 8.4781

>NTDB_id=695905 NC853_RS11040 WP_229930411.1 2102469..2102882(-) (pilE) [Neisseria gonorrhoeae strain 10328]
MPTDPDSRLRGNDEAILLAEGQKSAVTEYYLNHGKWPEDNDKAGVASPDKIIGKYVKQVEVKNGVVTAEMASTGVNKEIQ
GKKLSLWAKRQAGSVKWFCGQPVKRAAKDNDTVANDATNAIETKHLPSTCRDPFSAS

Nucleotide


Download         Length: 414 bp        

>NTDB_id=695905 NC853_RS11040 WP_229930411.1 2102469..2102882(-) (pilE) [Neisseria gonorrhoeae strain 10328]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTAC
CGAGTATTACCTGAATCACGGCAAATGGCCGGAAGACAACGACAAGGCCGGCGTGGCATCCCCCGACAAAATCATAGGCA
AATATGTTAAGCAAGTTGAAGTCAAAAACGGCGTCGTCACCGCCGAAATGGCTTCAACCGGCGTAAACAAAGAAATCCAA
GGCAAAAAACTCTCCCTGTGGGCCAAGCGTCAAGCCGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTAAGCGCGCCGC
CAAAGACAACGACACCGTTGCCAACGACGCCACCAACGCCATCGAAACCAAGCACCTGCCGTCAACCTGCCGCGACCCGT
TCTCTGCTAGCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

72.464

100

0.73
  pilE Neisseria gonorrhoeae MS11

70.504

100

0.715