Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   NCG89_RS13150 Genome accession   NZ_CP098455
Coordinates   2884472..2886658 (+) Length   728 a.a.
NCBI ID   WP_251087008.1    Uniprot ID   -
Organism   Spongiibacter taiwanensis strain SPT1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2879472..2891658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NCG89_RS13130 (NCG89_13130) pilM 2881668..2882735 (+) 1068 WP_251087004.1 pilus assembly protein PilM Machinery gene
  NCG89_RS13135 (NCG89_13135) - 2882735..2883310 (+) 576 WP_251087005.1 PilN domain-containing protein -
  NCG89_RS13140 (NCG89_13140) pilO 2883322..2883939 (+) 618 WP_251087006.1 type 4a pilus biogenesis protein PilO -
  NCG89_RS13145 (NCG89_13145) - 2883936..2884457 (+) 522 WP_251087007.1 pilus assembly protein PilP -
  NCG89_RS13150 (NCG89_13150) pilQ 2884472..2886658 (+) 2187 WP_251087008.1 type IV pilus secretin PilQ Machinery gene
  NCG89_RS13155 (NCG89_13155) aroK 2886702..2887202 (+) 501 WP_251087009.1 shikimate kinase AroK -
  NCG89_RS13160 (NCG89_13160) aroB 2887270..2888355 (+) 1086 WP_251087010.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 728 a.a.        Molecular weight: 79198.86 Da        Isoelectric Point: 4.5062

>NTDB_id=695611 NCG89_RS13150 WP_251087008.1 2884472..2886658(+) (pilQ) [Spongiibacter taiwanensis strain SPT1]
MFLSTRKMMQFFSLRRGAQANAGLGIGPSILAAVGLSALALNAFAADLENIQFNALQAGSFEARLTFSGPPPEVKGYTIE
KPARIALDFPGAGSALQQKKFPLAYDNASSAVVLEGQDRTRLVLNLVRLASYETRVEGNTLVVEVGGAGGKSYIKETYSN
PIVSTSASQPAGTDNMIRDLDFRRGDSGEGRLVIQLADDKADINVFVEGSKIKIDFNGVGLPQNLQRRFDVVDFATPVKR
IDARMGEKGARLSLEAQGEYDYLAYQTDTEYVVSVKPLTKQEVELRRKEFAYVGEKLSLNFQDIEVRSVLQLIADFTDLN
LVASDTVRGNITLRLQNVPWDQALELVLKTKGLDKRQVGNVLMVAPAAEIAERERQEIEAQKQVEELAPLQTEFIRIRYA
DADELFKLFKPDNDDDAGSTGSILSPRGTVIVDKRTNSLLITETADRLEEFRRLVALVDVPVRQVQIEARIVRASSDFDR
ALGVRWGGAYVKRDGDKIYSANGDIESDLETTGNFIDALASGSPTYEASPGLVTDLGVGGAAGSFALGFISSDVLLNLEL
SALESKGRGEIVSQPRIVTGDKEPAIIKSGTEIPYPQSSANGETTIAFKEAVLKLDVTPIITPDDRIIMDLVINQDTVGE
LVIATGLGGQVPTIDTTELQTRVLVSNGETVVLGGVYDQLDIESETKVPLLGDIPFLGRLFKNTSVTREKQETLIFITPR
ILADSLVD

Nucleotide


Download         Length: 2187 bp        

>NTDB_id=695611 NCG89_RS13150 WP_251087008.1 2884472..2886658(+) (pilQ) [Spongiibacter taiwanensis strain SPT1]
ATGTTCTTAAGTACCCGAAAAATGATGCAATTCTTTAGCCTTCGCCGGGGCGCGCAAGCGAACGCAGGGCTGGGGATTGG
GCCGTCGATCCTAGCTGCTGTGGGACTGAGTGCGCTTGCGTTGAACGCCTTTGCCGCTGACCTGGAGAATATCCAGTTTA
ACGCGCTGCAGGCAGGGAGTTTTGAGGCGAGGCTCACCTTCAGTGGTCCGCCACCAGAGGTGAAGGGCTATACCATCGAG
AAGCCCGCCCGTATCGCCCTTGATTTCCCCGGCGCTGGCAGTGCGCTGCAACAGAAAAAATTCCCCCTAGCCTATGATAA
TGCGAGCAGCGCGGTGGTGCTGGAAGGTCAGGATCGCACTCGTCTGGTGTTGAACCTCGTTCGTCTGGCAAGTTATGAGA
CCCGGGTTGAGGGCAATACCCTGGTGGTCGAAGTGGGCGGTGCCGGTGGTAAGAGCTATATCAAAGAAACCTACAGCAAC
CCGATCGTCTCTACCTCGGCCAGTCAGCCGGCCGGCACTGACAATATGATCCGCGACCTGGATTTTCGCCGGGGCGATTC
GGGTGAAGGTCGATTGGTCATTCAACTGGCCGATGACAAAGCCGACATCAACGTGTTTGTTGAAGGCAGCAAAATCAAGA
TCGATTTCAACGGTGTCGGCTTGCCGCAAAATTTGCAGCGGCGCTTTGATGTGGTGGATTTTGCCACCCCAGTCAAACGG
ATCGATGCCCGGATGGGTGAGAAGGGCGCAAGGCTTTCTCTTGAGGCTCAGGGTGAGTATGACTACTTGGCCTATCAAAC
CGACACCGAGTATGTGGTGAGTGTTAAGCCCCTGACCAAGCAGGAAGTGGAGCTGCGGCGTAAAGAATTTGCCTACGTTG
GTGAGAAGCTGTCGCTCAACTTCCAGGATATTGAAGTCCGTTCGGTGCTACAGCTGATCGCCGACTTTACCGACCTCAAC
TTGGTGGCCAGCGACACGGTTCGCGGCAATATCACACTGCGTTTGCAGAATGTGCCCTGGGATCAGGCGCTGGAATTGGT
GCTGAAAACCAAGGGGCTCGACAAACGTCAGGTGGGCAATGTGTTGATGGTTGCGCCAGCGGCGGAGATTGCCGAGCGCG
AGCGTCAAGAGATTGAGGCCCAGAAGCAGGTCGAGGAGTTGGCCCCCCTGCAAACCGAGTTCATCCGCATACGCTATGCT
GACGCTGATGAGCTGTTCAAACTGTTTAAGCCCGATAACGATGATGACGCTGGGTCCACAGGCAGCATTCTTTCTCCCCG
GGGTACGGTGATTGTCGACAAGCGGACTAACTCCCTGTTGATCACGGAAACGGCCGATCGCCTGGAAGAGTTCCGCCGTC
TGGTGGCGCTGGTTGATGTGCCGGTTCGGCAGGTGCAGATTGAGGCAAGGATCGTGCGGGCATCCTCCGATTTTGACCGC
GCCCTGGGTGTGCGTTGGGGCGGTGCTTATGTAAAACGCGATGGCGACAAAATTTACTCGGCCAATGGCGATATCGAGAG
TGATTTGGAAACCACCGGCAACTTCATTGATGCGCTGGCGTCTGGGAGTCCGACCTATGAAGCCTCGCCCGGTCTGGTGA
CCGATTTGGGCGTTGGTGGCGCGGCAGGTTCTTTCGCACTGGGCTTTATCAGCTCCGATGTATTGCTGAATCTGGAATTG
TCAGCCCTGGAATCCAAGGGCCGCGGCGAAATTGTCTCCCAGCCTCGGATCGTAACGGGTGACAAGGAACCTGCCATTAT
CAAATCTGGTACCGAGATCCCCTATCCGCAGTCCTCCGCGAATGGCGAGACAACCATCGCCTTCAAAGAGGCGGTTCTGA
AGTTGGATGTGACCCCAATCATTACCCCAGACGACCGCATTATTATGGATCTGGTGATTAATCAGGACACCGTTGGCGAG
CTGGTCATCGCCACTGGGCTGGGCGGCCAGGTGCCGACCATTGATACCACCGAGTTGCAAACCCGGGTTCTGGTAAGCAA
TGGCGAGACCGTTGTGCTGGGGGGTGTTTACGACCAGCTAGACATTGAGTCCGAGACCAAGGTCCCGCTGCTCGGCGATA
TCCCCTTCCTCGGCAGGCTGTTCAAAAATACCTCCGTCACTCGTGAGAAGCAGGAGACGCTGATTTTTATCACGCCGCGC
ATTCTCGCCGATAGCCTGGTAGATTGA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(562-722)

AMIN domain (AMIN)

(64-144)

Secretin and TonB N terminus short domain (STN)

(320-366)

Bacterial type II/III secretion system short domain (Secretin_N)

(393-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

48.276

99.588

0.481
  pilQ Acinetobacter baumannii strain A118

40.244

100

0.408
  pilQ Acinetobacter baumannii D1279779

40.244

100

0.408
  comQ Acinetobacter baylyi ADP1

41.703

95.192

0.397