Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   NCG89_RS13130 Genome accession   NZ_CP098455
Coordinates   2881668..2882735 (+) Length   355 a.a.
NCBI ID   WP_251087004.1    Uniprot ID   -
Organism   Spongiibacter taiwanensis strain SPT1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2876668..2887735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NCG89_RS13120 (NCG89_13120) radA 2877665..2879026 (+) 1362 WP_251087002.1 DNA repair protein RadA -
  NCG89_RS13125 (NCG89_13125) - 2879046..2881496 (-) 2451 WP_251087003.1 penicillin-binding protein 1A -
  NCG89_RS13130 (NCG89_13130) pilM 2881668..2882735 (+) 1068 WP_251087004.1 pilus assembly protein PilM Machinery gene
  NCG89_RS13135 (NCG89_13135) - 2882735..2883310 (+) 576 WP_251087005.1 PilN domain-containing protein -
  NCG89_RS13140 (NCG89_13140) pilO 2883322..2883939 (+) 618 WP_251087006.1 type 4a pilus biogenesis protein PilO -
  NCG89_RS13145 (NCG89_13145) - 2883936..2884457 (+) 522 WP_251087007.1 pilus assembly protein PilP -
  NCG89_RS13150 (NCG89_13150) pilQ 2884472..2886658 (+) 2187 WP_251087008.1 type IV pilus secretin PilQ Machinery gene
  NCG89_RS13155 (NCG89_13155) aroK 2886702..2887202 (+) 501 WP_251087009.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 37994.46 Da        Isoelectric Point: 4.2361

>NTDB_id=695610 NCG89_RS13130 WP_251087004.1 2881668..2882735(+) (pilM) [Spongiibacter taiwanensis strain SPT1]
MLKGLLGGKSSQNLLGVDISSSAVKLLELSRSGEKFRVESYAVMSLPAHAVVEKNIAEVEVVAEVLRSVIARSRSKVKRA
AVAVPGSAVITKVLRMPADMNENALEAQISLEADQYIPYPLDEVALDFEILGLAEDNPDQAEVLLVACRRDNVDLRTEAL
EIAGLEPKLVDVEAFAVERSFELMASALGCDENTVVAIVDIGASMTSLSVIVDGETLYTRDQLFGGRQLTEEIQRRYGMT
VEEAGLAKKQGGLSEDYDSEVLAPFKEAVIQQVSRSLQFFYSSSQYNAVDMILLAGGVAAMHGLAELVERELGVSTVVAN
PFGSMAVASGVDAMSLSNDAPAMLIACGLALRSFD

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=695610 NCG89_RS13130 WP_251087004.1 2881668..2882735(+) (pilM) [Spongiibacter taiwanensis strain SPT1]
GTGCTAAAAGGCCTGTTAGGCGGTAAATCATCGCAAAATCTCCTTGGCGTGGATATCAGCTCCAGCGCGGTGAAACTGTT
GGAGCTCAGCCGCAGTGGCGAAAAGTTTCGCGTGGAAAGCTATGCGGTGATGTCGCTTCCCGCCCATGCGGTGGTGGAAA
AGAACATCGCTGAGGTCGAGGTGGTGGCCGAAGTGCTCCGCTCGGTGATAGCGCGCTCGCGCAGCAAGGTGAAACGGGCC
GCGGTAGCGGTGCCGGGGTCTGCGGTCATTACCAAGGTGCTGAGAATGCCCGCGGATATGAATGAGAATGCGCTGGAAGC
GCAGATTTCTCTGGAAGCCGATCAGTACATTCCTTATCCCCTCGATGAAGTTGCGCTGGATTTCGAAATTTTGGGTCTTG
CAGAAGACAATCCCGATCAGGCCGAGGTACTGCTGGTCGCTTGTCGACGGGATAACGTGGACTTGCGGACCGAGGCCTTG
GAAATTGCTGGGCTCGAGCCAAAACTGGTGGACGTGGAAGCCTTTGCCGTTGAGCGCAGCTTCGAGTTGATGGCCTCGGC
GCTGGGTTGCGATGAGAATACCGTGGTCGCTATCGTTGATATCGGTGCTTCCATGACCTCCCTGAGTGTGATCGTCGACG
GCGAAACGCTCTATACCCGGGATCAGTTGTTCGGCGGCCGGCAGCTCACCGAAGAGATTCAACGCCGTTACGGTATGACC
GTAGAAGAAGCGGGACTGGCCAAAAAACAGGGTGGCCTTTCCGAAGACTATGACAGTGAAGTGTTGGCTCCGTTCAAAGA
AGCGGTGATCCAGCAAGTGTCGCGTTCCTTGCAGTTCTTTTATTCCTCCAGTCAGTACAACGCCGTCGACATGATTTTGC
TCGCCGGCGGAGTCGCCGCGATGCACGGCTTGGCCGAGTTGGTTGAGCGGGAGTTGGGTGTAAGCACGGTGGTGGCCAAC
CCCTTCGGATCCATGGCAGTGGCATCCGGGGTGGATGCAATGAGCCTGAGTAATGATGCGCCAGCAATGCTAATCGCGTG
TGGGTTGGCCCTGAGGAGCTTCGATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(16-354)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

53.602

97.746

0.524
  comM Acinetobacter nosocomialis M2

53.602

97.746

0.524
  comM Acinetobacter baylyi ADP1

51.009

97.746

0.499
  pilM Legionella pneumophila strain ERS1305867

47.191

100

0.473