Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NCG89_RS08320 Genome accession   NZ_CP098455
Coordinates   1799227..1800714 (+) Length   495 a.a.
NCBI ID   WP_251089283.1    Uniprot ID   -
Organism   Spongiibacter taiwanensis strain SPT1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1794227..1805714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NCG89_RS08295 (NCG89_08295) ureC 1794499..1796202 (-) 1704 WP_251089278.1 urease subunit alpha -
  NCG89_RS08300 (NCG89_08300) - 1796199..1796525 (-) 327 WP_251089279.1 urease subunit beta -
  NCG89_RS08305 (NCG89_08305) ureA 1796537..1796839 (-) 303 WP_251089280.1 urease subunit gamma -
  NCG89_RS08310 (NCG89_08310) - 1797793..1798689 (-) 897 WP_251089281.1 urease accessory protein UreD -
  NCG89_RS08315 (NCG89_08315) - 1798878..1799150 (+) 273 WP_251089282.1 accessory factor UbiK family protein -
  NCG89_RS08320 (NCG89_08320) comM 1799227..1800714 (+) 1488 WP_251089283.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NCG89_RS08325 (NCG89_08325) - 1800949..1802616 (-) 1668 WP_251089284.1 hypothetical protein -
  NCG89_RS08330 (NCG89_08330) rep 1803036..1805042 (+) 2007 WP_251089368.1 DNA helicase Rep -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 52857.80 Da        Isoelectric Point: 6.9097

>NTDB_id=695604 NCG89_RS08320 WP_251089283.1 1799227..1800714(+) (comM) [Spongiibacter taiwanensis strain SPT1]
MPLATVFSRAKLGVQAPLVTVEVHLSSGLPAFNIVGLPEATVREARDRVRSALINSRFEFPVSRITVNLAPADLPKEGGR
FDLPIAIGILVASGQLPLNSIDGYEFLGELGLGGELRPVDAALPAAVACAAEDKVLVVPAGNQGLAAIIDASDLREAPSL
LAVVAHMAGQTALPFGSELTPDGEVMAAAYPDLADVRGQESAKRALEIAAAGGHSLLMSGPPGTGKTLLANRLPGILPPL
NAEEQRDIAIVQSVAGKPLQLRRPFRAPHHTASAVALVGGGSQPKPGEISLAHHGILFLDEVVEYPRKVLEVLREPLESG
EVTISRASQQLTFPARFQLIAAMNPCPCGFDGDPTRECRCTPDQIQRYRQRLSGPLLDRIDLRLTVPRLPPGILQSSTPG
ESSATVRERVCRARCKQLARGPRCNAQLEAAEVSDHCHLGVNEKNFMIQAEQKLDLSARAHHRIIKVARTIADLADSDRI
ALVHLQEAIAYRGDF

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=695604 NCG89_RS08320 WP_251089283.1 1799227..1800714(+) (comM) [Spongiibacter taiwanensis strain SPT1]
ATGCCACTTGCCACCGTTTTCAGCCGAGCCAAGCTCGGCGTTCAAGCCCCGTTAGTCACGGTCGAGGTGCACCTCTCCAG
CGGCCTACCCGCCTTTAATATAGTCGGACTGCCAGAGGCAACCGTGCGAGAAGCCAGAGACCGAGTTCGCTCTGCGCTGA
TCAATTCGCGCTTCGAATTTCCCGTCAGCCGCATTACCGTCAACCTCGCCCCGGCCGACCTACCCAAGGAAGGCGGACGT
TTCGATTTACCCATCGCCATCGGCATTTTGGTGGCCTCGGGGCAATTGCCTCTCAACAGCATCGATGGCTACGAATTTCT
CGGCGAGCTGGGGCTCGGTGGTGAGCTGCGCCCGGTGGATGCCGCCCTCCCCGCCGCTGTAGCCTGCGCCGCTGAAGATA
AAGTGCTCGTGGTCCCTGCCGGCAACCAGGGGCTGGCGGCCATTATCGACGCATCCGATCTGCGCGAAGCCCCCTCGCTA
TTGGCCGTAGTGGCCCATATGGCCGGACAAACCGCACTGCCGTTCGGCTCTGAATTAACCCCCGACGGCGAGGTGATGGC
GGCAGCGTATCCCGACCTTGCCGATGTCCGCGGCCAGGAATCCGCAAAGCGCGCTCTGGAAATCGCTGCCGCTGGCGGCC
ATAGCCTGCTGATGAGCGGCCCACCCGGCACAGGCAAAACCCTGCTCGCCAACCGCCTGCCCGGCATCCTGCCGCCCCTC
AATGCCGAGGAGCAGCGCGACATTGCCATCGTGCAATCGGTGGCCGGCAAACCACTGCAATTGCGGCGGCCCTTTCGGGC
ACCCCACCACACCGCCTCGGCGGTCGCGCTGGTGGGCGGTGGCAGCCAGCCCAAGCCAGGGGAAATTTCGCTGGCTCATC
ACGGGATTTTATTTTTAGATGAAGTCGTTGAGTACCCGCGCAAAGTGCTGGAAGTGTTGCGCGAGCCCCTTGAGTCGGGC
GAGGTAACGATCTCCCGGGCCAGCCAGCAGCTCACCTTTCCCGCCCGCTTCCAATTGATCGCTGCCATGAACCCCTGTCC
CTGCGGCTTTGATGGGGACCCCACCCGGGAATGCCGCTGCACCCCGGACCAGATTCAGCGCTATCGTCAGCGCCTGTCCG
GGCCGCTGCTGGACAGAATCGACCTGCGCTTAACCGTTCCCCGGCTGCCGCCGGGGATTTTGCAATCCAGCACCCCGGGA
GAATCCAGCGCAACGGTCAGAGAACGGGTCTGCCGGGCGCGATGCAAACAGCTAGCCCGAGGGCCGCGCTGCAATGCCCA
GCTCGAAGCCGCCGAAGTGAGTGACCACTGTCACCTGGGTGTTAATGAGAAAAACTTCATGATTCAGGCTGAACAGAAAC
TCGATCTGAGTGCCCGGGCACACCATCGGATTATCAAAGTGGCCCGCACCATTGCCGATCTTGCAGACAGCGACCGTATC
GCGCTAGTCCACTTACAGGAGGCCATTGCTTACCGGGGAGATTTCTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.418

100

0.547
  comM Vibrio campbellii strain DS40M4

53.815

100

0.541
  comM Haemophilus influenzae Rd KW20

53.2

100

0.537
  comM Glaesserella parasuis strain SC1401

52

100

0.525
  comM Legionella pneumophila str. Paris

49.004

100

0.497
  comM Legionella pneumophila strain ERS1305867

49.004

100

0.497
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.223

100

0.448