Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NCG89_RS07435 Genome accession   NZ_CP098455
Coordinates   1615849..1616346 (-) Length   165 a.a.
NCBI ID   WP_251089128.1    Uniprot ID   -
Organism   Spongiibacter taiwanensis strain SPT1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1610849..1621346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NCG89_RS07410 (NCG89_07410) fabA 1611182..1611706 (+) 525 WP_251089123.1 bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase -
  NCG89_RS07415 (NCG89_07415) fabB 1611752..1612972 (+) 1221 WP_251089124.1 beta-ketoacyl-ACP synthase I -
  NCG89_RS07420 (NCG89_07420) glp 1613043..1614248 (-) 1206 WP_251089125.1 gephyrin-like molybdotransferase Glp -
  NCG89_RS07425 (NCG89_07425) moaB 1614251..1614778 (-) 528 WP_251089126.1 molybdenum cofactor biosynthesis protein B -
  NCG89_RS07430 (NCG89_07430) - 1614775..1615635 (-) 861 WP_251089127.1 sugar nucleotide-binding protein -
  NCG89_RS07435 (NCG89_07435) ssb 1615849..1616346 (-) 498 WP_251089128.1 single-stranded DNA-binding protein Machinery gene
  NCG89_RS07440 (NCG89_07440) - 1616420..1617784 (-) 1365 WP_251089129.1 MFS transporter -
  NCG89_RS07445 (NCG89_07445) uvrA 1617932..1620784 (+) 2853 WP_251089130.1 excinuclease ABC subunit UvrA -
  NCG89_RS07450 (NCG89_07450) - 1620792..1621067 (-) 276 WP_251089131.1 hypothetical protein -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18389.26 Da        Isoelectric Point: 5.0012

>NTDB_id=695603 NCG89_RS07435 WP_251089128.1 1615849..1616346(-) (ssb) [Spongiibacter taiwanensis strain SPT1]
MARGINKVILVGNLGQDPETRYMPSGGAVTNVTLATSETWKDKQTGQPQERTEWHRVVFFNRLAEIAGEYLKKGSKVYVE
GSLRTRKWQGQDGQDRYTTEIVAAEMQMLDSRGGGGGYDDYSSAPQSNQRPPQQQRRPAPQQNTPPVNEPPPSGGFDDFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=695603 NCG89_RS07435 WP_251089128.1 1615849..1616346(-) (ssb) [Spongiibacter taiwanensis strain SPT1]
ATGGCGCGTGGCATAAACAAAGTGATTTTGGTGGGCAATCTGGGTCAGGACCCGGAGACCCGATACATGCCCTCTGGTGG
CGCGGTGACCAATGTGACACTGGCAACCAGTGAGACCTGGAAAGACAAACAGACTGGCCAGCCTCAAGAGCGCACCGAGT
GGCACCGGGTGGTATTTTTTAACCGCCTTGCCGAGATTGCCGGCGAGTACTTGAAGAAGGGCTCCAAAGTCTACGTTGAG
GGTTCGCTGCGGACTCGCAAATGGCAGGGTCAGGATGGTCAGGACCGCTACACTACTGAAATCGTGGCGGCCGAGATGCA
AATGCTGGATAGCCGCGGCGGCGGTGGTGGGTATGATGATTATTCGTCTGCACCCCAATCCAATCAGCGGCCTCCCCAGC
AGCAGCGCCGGCCCGCGCCGCAGCAAAATACGCCCCCCGTCAATGAGCCCCCGCCGAGCGGCGGCTTTGATGACTTTGAT
GACGATATTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.778

100

0.63
  ssb Glaesserella parasuis strain SC1401

52.198

100

0.576
  ssb Neisseria gonorrhoeae MS11

50.867

100

0.533
  ssb Neisseria meningitidis MC58

49.711

100

0.521
  ssb Latilactobacillus sakei subsp. sakei 23K

34.286

100

0.364