Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NB646_RS02000 Genome accession   NZ_CP098251
Coordinates   390889..392409 (-) Length   506 a.a.
NCBI ID   WP_269283805.1    Uniprot ID   -
Organism   Oxalobacter aliiformigenes strain OxK     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 385889..397409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NB646_RS01965 (NB646_01955) rfaE2 385913..386392 (+) 480 WP_269278236.1 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase -
  NB646_RS01970 (NB646_01960) ttcA 386363..387214 (-) 852 WP_269316099.1 tRNA 2-thiocytidine(32) synthetase TtcA -
  NB646_RS01975 (NB646_01965) - 387229..387624 (-) 396 WP_269264809.1 dihydroneopterin aldolase -
  NB646_RS01980 (NB646_01970) - 387629..388411 (-) 783 WP_269278232.1 SDR family oxidoreductase -
  NB646_RS01985 (NB646_01975) - 388557..389714 (+) 1158 WP_332880082.1 class I SAM-dependent methyltransferase -
  NB646_RS01990 (NB646_01980) - 389734..390336 (-) 603 WP_269264811.1 hypothetical protein -
  NB646_RS01995 (NB646_01985) - 390462..390845 (-) 384 WP_269264812.1 DUF1840 domain-containing protein -
  NB646_RS02000 (NB646_01990) comM 390889..392409 (-) 1521 WP_269283805.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NB646_RS02005 (NB646_01995) - 392406..392678 (-) 273 WP_269283807.1 accessory factor UbiK family protein -
  NB646_RS02010 (NB646_02000) gshA 393152..394447 (+) 1296 WP_269264815.1 glutamate--cysteine ligase -
  NB646_RS02015 (NB646_02005) gshB 394462..395403 (+) 942 WP_269316399.1 glutathione synthase -
  NB646_RS02020 (NB646_02010) - 395491..395880 (+) 390 WP_269264816.1 PTS sugar transporter subunit IIA -
  NB646_RS02025 (NB646_02015) - 395986..396255 (+) 270 WP_269264817.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55617.81 Da        Isoelectric Point: 9.2597

>NTDB_id=694721 NB646_RS02000 WP_269283805.1 390889..392409(-) (comM) [Oxalobacter aliiformigenes strain OxK]
MNLAILKSRALSGMKAPEVTVEVHLANGLPSFTIVGLPETEVKEAKDRVRAALQNIRFEFPARRITVNLAPADLPKESGR
FDLPIALGILAASGQIRQDQLDRYEFAGELSLSGELRAIRGALAMAYAISQNPKASEKAFILPSANADEAAFVQNLKILP
ANTLLEVCAHLNTASGMPGLVPYVARHDKQRPEYPDFSEVKGQFKVKRALEIAAAGNHSVLMSGPPGTGKTMLASRFAGI
LPPMTDKEAIESAAIQSLSGQFNPSRWKTRPFRSPHHTASAIALIGGGSTPRPGEVSLAHHGVLFLDELPEFDRHVLEVL
REPLESGHIVISRAARQADFPARFQLIAAMNPCPCGYYGHPSGKCHCSPDSIARYQRKISGPLLDRIDIQVSVNALRQEE
LSRFAETGESSEAIASRVRKAYDIQLKRQGKPNNQLTAREIDDFCLLDESGERLLKEAMARLMWSARAYHRILKISRTIA
DLARTETIRPEHVAEAIQYRRALKEN

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=694721 NB646_RS02000 WP_269283805.1 390889..392409(-) (comM) [Oxalobacter aliiformigenes strain OxK]
ATGAATCTCGCGATTTTAAAAAGCCGTGCTCTTTCAGGCATGAAAGCCCCGGAAGTGACTGTGGAAGTCCATCTGGCAAA
CGGTCTGCCGTCTTTCACTATCGTCGGTTTGCCGGAAACAGAGGTCAAGGAAGCCAAAGATCGCGTCAGGGCAGCCTTGC
AAAACATCCGGTTCGAATTTCCGGCAAGGCGAATAACGGTCAACCTCGCTCCGGCCGATCTTCCAAAAGAATCGGGCCGA
TTTGATTTACCGATCGCCCTGGGAATCCTGGCAGCATCCGGACAAATCCGTCAGGACCAGCTGGACCGCTATGAATTTGC
CGGAGAGCTATCGTTATCCGGAGAACTCCGTGCCATTCGCGGAGCACTGGCAATGGCCTATGCGATAAGCCAGAACCCAA
AGGCATCCGAGAAAGCTTTCATTCTTCCGTCTGCCAACGCTGATGAAGCAGCCTTTGTACAAAATCTGAAAATTCTTCCG
GCCAATACCCTGCTTGAAGTCTGCGCTCATCTGAACACGGCTTCCGGTATGCCGGGTCTGGTTCCCTATGTCGCCCGACA
TGACAAACAGCGTCCCGAATACCCCGATTTCAGCGAGGTCAAGGGACAATTCAAAGTAAAAAGGGCGCTCGAAATCGCCG
CAGCCGGCAATCACAGCGTCCTGATGAGCGGACCTCCAGGGACCGGCAAAACCATGCTGGCATCACGTTTTGCAGGAATA
TTGCCTCCCATGACGGACAAGGAAGCCATTGAATCGGCCGCCATTCAGTCCCTGAGTGGCCAGTTCAATCCGTCCCGATG
GAAAACGCGACCTTTTCGTTCCCCTCACCATACTGCTTCCGCCATCGCCCTGATCGGAGGCGGGAGTACACCCCGTCCAG
GCGAAGTCTCTCTGGCACATCATGGCGTTCTTTTCCTGGATGAATTGCCCGAATTCGATCGCCATGTTCTGGAAGTACTC
CGTGAACCGCTTGAATCCGGACACATCGTCATCTCGCGGGCTGCCAGACAGGCTGATTTTCCTGCCCGATTCCAGCTCAT
TGCCGCAATGAATCCCTGTCCTTGCGGTTATTACGGTCATCCCTCTGGGAAATGTCACTGCTCTCCTGACTCTATTGCCC
GTTACCAGCGGAAAATATCCGGGCCTCTTCTGGATCGGATCGACATTCAGGTATCTGTCAATGCCTTGAGACAGGAAGAG
TTGTCCAGATTCGCAGAAACAGGCGAATCTTCCGAAGCAATCGCTTCCCGGGTCAGGAAAGCTTACGACATTCAGCTGAA
AAGACAGGGTAAACCGAACAACCAGCTTACTGCCCGGGAAATAGATGACTTTTGTCTTCTTGACGAGTCCGGTGAACGTT
TGCTTAAGGAGGCGATGGCCAGACTGATGTGGTCGGCACGCGCTTACCATCGTATTCTGAAAATTTCAAGAACGATTGCC
GATCTGGCCCGAACGGAAACGATCAGGCCTGAACATGTGGCAGAAGCAATTCAGTACAGAAGGGCTCTGAAAGAAAATTG
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(408-500)

Subunit ChlI of Mg-chelatase (ChlI)

(21-146)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(196-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.118

100

0.545
  comM Vibrio campbellii strain DS40M4

53.922

100

0.543
  comM Glaesserella parasuis strain SC1401

53.082

99.407

0.528
  comM Legionella pneumophila str. Paris

51.779

100

0.518
  comM Legionella pneumophila strain ERS1305867

51.779

100

0.518
  comM Haemophilus influenzae Rd KW20

51.491

99.407

0.512
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

48.406

99.209

0.48