Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NB641_RS02550 Genome accession   NZ_CP098250
Coordinates   513819..515339 (-) Length   506 a.a.
NCBI ID   WP_269264813.1    Uniprot ID   -
Organism   Oxalobacter aliiformigenes strain HOxNP-3     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 508819..520339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NB641_RS02515 (NB641_02510) rfaE2 508843..509322 (+) 480 WP_269264807.1 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase -
  NB641_RS02520 (NB641_02515) ttcA 509293..510144 (-) 852 WP_269264808.1 tRNA 2-thiocytidine(32) synthetase TtcA -
  NB641_RS02525 (NB641_02520) - 510159..510554 (-) 396 WP_269264809.1 dihydroneopterin aldolase -
  NB641_RS02530 (NB641_02525) - 510559..511341 (-) 783 WP_269264810.1 SDR family oxidoreductase -
  NB641_RS02535 (NB641_02530) - 511487..512644 (+) 1158 WP_332879824.1 class I SAM-dependent methyltransferase -
  NB641_RS02540 (NB641_02535) - 512664..513266 (-) 603 WP_269264811.1 hypothetical protein -
  NB641_RS02545 (NB641_02540) - 513392..513775 (-) 384 WP_269264812.1 DUF1840 domain-containing protein -
  NB641_RS02550 (NB641_02545) comM 513819..515339 (-) 1521 WP_269264813.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NB641_RS02555 (NB641_02550) - 515336..515608 (-) 273 WP_269264814.1 accessory factor UbiK family protein -
  NB641_RS02560 (NB641_02555) - 515758..516054 (-) 297 WP_269300505.1 hypothetical protein -
  NB641_RS02565 (NB641_02560) gshA 516082..517377 (+) 1296 WP_269264815.1 glutamate--cysteine ligase -
  NB641_RS02570 (NB641_02565) gshB 517392..518333 (+) 942 WP_269265775.1 glutathione synthase -
  NB641_RS02575 (NB641_02570) - 518469..518810 (+) 342 WP_416143502.1 PTS sugar transporter subunit IIA -
  NB641_RS02580 (NB641_02575) - 518916..519185 (+) 270 WP_269264817.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55693.90 Da        Isoelectric Point: 9.2389

>NTDB_id=694710 NB641_RS02550 WP_269264813.1 513819..515339(-) (comM) [Oxalobacter aliiformigenes strain HOxNP-3]
MNLAILKSRALSGMKAPEVTVEVHLANGLPSFTIVGLPETEVKEAKDRVRAALQNIRFEFPARRITVNLAPADLPKESGR
FDLPIALGILAASGQIRQDQLDRYEFAGELSLSGELRAIRGALAMAYAISQNPKASEKAFILPSANADEAAFVQNLKILP
ANTLLEVCAHLNTASGMPGLVPYVARHDKQRPEYPDFSEVKGQFKVKRALEIAAAGNHSVLMSGPPGTGKTMLASRFAGI
LPPMTDKEAIESAAIQSLSGQFNPSRWKTRPFRSPHHTASAIALIGGGSTPRPGEVSLAHHGVLFLDELPEFDRHVLEVL
REPLESGHIVISRAARQADFPARFQLIAAMNPCPCGYYGHPSGKCHCSPDSIARYQRKISGPLLDRIDIQVSVNALRQEE
LSRFAETGEYSEAIASRVRKAYDIQLKRQGKPNNQLTAREIDDFCLLDESGERLLKEAMARLMWSARAYHRILKISRTIA
DLARTETIRPEHVAEAIQYRRALKEN

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=694710 NB641_RS02550 WP_269264813.1 513819..515339(-) (comM) [Oxalobacter aliiformigenes strain HOxNP-3]
ATGAATCTCGCGATTTTAAAAAGCCGTGCTCTTTCAGGCATGAAAGCCCCGGAAGTGACTGTGGAAGTCCATCTGGCAAA
CGGTCTGCCGTCTTTCACTATCGTCGGTTTGCCGGAAACAGAGGTCAAGGAAGCCAAAGATCGCGTCAGGGCAGCCTTGC
AAAACATCCGGTTCGAATTTCCGGCAAGGCGAATAACGGTCAACCTCGCTCCGGCCGATCTTCCAAAAGAATCGGGCCGA
TTTGATTTGCCGATCGCCCTGGGAATCCTGGCAGCATCCGGACAAATCCGTCAGGACCAGCTGGACCGCTATGAATTTGC
CGGAGAGCTATCGTTATCCGGAGAACTCCGTGCCATTCGCGGAGCACTGGCAATGGCCTATGCGATAAGCCAGAACCCAA
AGGCATCCGAGAAAGCTTTCATTCTTCCGTCTGCCAACGCTGATGAAGCAGCCTTTGTACAAAATCTGAAAATTCTTCCG
GCCAATACCCTGCTTGAAGTCTGCGCTCATCTGAACACGGCTTCCGGTATGCCGGGCCTGGTTCCCTATGTCGCCCGACA
TGACAAACAGCGTCCCGAATACCCCGATTTCAGCGAGGTCAAGGGACAATTCAAAGTAAAAAGGGCGCTCGAAATCGCCG
CAGCCGGCAATCACAGCGTCCTGATGAGCGGACCTCCAGGGACCGGCAAAACCATGCTGGCATCACGTTTTGCAGGAATA
TTGCCTCCCATGACGGACAAGGAAGCCATTGAATCGGCCGCCATTCAGTCCCTGAGTGGCCAGTTCAATCCGTCCCGATG
GAAAACGCGACCTTTTCGTTCCCCTCACCATACTGCTTCCGCCATCGCCCTGATCGGAGGCGGGAGTACACCCCGTCCAG
GCGAAGTCTCTCTGGCACATCATGGCGTTCTTTTCCTGGATGAATTGCCCGAATTCGATCGCCATGTTCTGGAAGTACTC
CGTGAACCGCTTGAATCCGGACACATCGTCATCTCGCGGGCAGCCAGACAGGCTGATTTTCCTGCCCGATTTCAGCTCAT
TGCCGCAATGAATCCCTGTCCTTGCGGTTATTACGGTCATCCCTCCGGGAAATGTCACTGCTCTCCTGACTCTATTGCCC
GTTACCAGCGGAAAATATCCGGGCCTCTTCTGGATCGGATCGACATTCAGGTATCTGTCAATGCCTTGAGACAGGAAGAA
TTGTCCAGATTCGCAGAAACAGGCGAATATTCCGAAGCAATCGCTTCCCGGGTCAGGAAAGCTTACGACATTCAGCTGAA
AAGACAGGGTAAACCGAACAACCAGCTTACTGCCCGGGAAATAGATGACTTTTGTCTTCTTGACGAGTCCGGTGAACGTT
TGCTTAAGGAGGCGATGGCCAGACTGATGTGGTCGGCACGCGCTTACCATCGTATTCTGAAAATTTCAAGAACGATTGCC
GATCTGGCCCGAACGGAAACGATCAGGCCTGAACATGTGGCAGAAGCAATTCAGTACAGAAGGGCTCTGAAAGAAAATTG
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(409-500)

Subunit ChlI of Mg-chelatase (ChlI)

(21-146)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(196-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

53.922

100

0.543
  comM Vibrio cholerae strain A1552

53.922

100

0.543
  comM Glaesserella parasuis strain SC1401

53.082

99.407

0.528
  comM Legionella pneumophila str. Paris

51.779

100

0.518
  comM Legionella pneumophila strain ERS1305867

51.779

100

0.518
  comM Haemophilus influenzae Rd KW20

51.491

99.407

0.512
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

48.207

99.209

0.478