Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NB636_RS09275 Genome accession   NZ_CP098247
Coordinates   1924613..1926133 (+) Length   506 a.a.
NCBI ID   WP_269278225.1    Uniprot ID   -
Organism   Oxalobacter aliiformigenes strain BA2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1919613..1931133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NB636_RS09250 (NB636_09215) - 1920768..1921037 (-) 270 WP_269264817.1 HPr family phosphocarrier protein -
  NB636_RS09255 (NB636_09220) - 1921143..1921484 (-) 342 WP_407946854.1 PTS sugar transporter subunit IIA -
  NB636_RS09260 (NB636_09225) gshB 1921620..1922560 (-) 941 Protein_1810 glutathione synthase -
  NB636_RS09265 (NB636_09230) gshA 1922575..1923870 (-) 1296 WP_269278221.1 glutamate--cysteine ligase -
  NB636_RS09270 (NB636_09235) - 1924344..1924616 (+) 273 WP_269278223.1 accessory factor UbiK family protein -
  NB636_RS09275 (NB636_09240) comM 1924613..1926133 (+) 1521 WP_269278225.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NB636_RS09280 (NB636_09245) - 1926177..1926560 (+) 384 WP_269278227.1 DUF1840 domain-containing protein -
  NB636_RS09285 (NB636_09250) - 1926686..1927288 (+) 603 WP_269278230.1 hypothetical protein -
  NB636_RS09290 (NB636_09255) - 1927308..1928465 (-) 1158 WP_331282735.1 class I SAM-dependent methyltransferase -
  NB636_RS09295 (NB636_09260) - 1928611..1929393 (+) 783 WP_269278232.1 SDR family oxidoreductase -
  NB636_RS09300 (NB636_09265) - 1929398..1929793 (+) 396 WP_269264809.1 dihydroneopterin aldolase -
  NB636_RS09305 (NB636_09270) ttcA 1929808..1930659 (+) 852 WP_269278234.1 tRNA 2-thiocytidine(32) synthetase TtcA -
  NB636_RS09310 (NB636_09275) rfaE2 1930630..1931109 (-) 480 WP_269278236.1 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55523.68 Da        Isoelectric Point: 9.0755

>NTDB_id=694673 NB636_RS09275 WP_269278225.1 1924613..1926133(+) (comM) [Oxalobacter aliiformigenes strain BA2]
MSLAILKSRALSGMKAPEVTVEVHLANGLPSFTIVGLPETEVKEAKDRVRAALQNIRFEFPARRITVNLAPADLPKESGR
FDLPIALGILAASGQIRQDQLDRYEFAGELSLSGELRAIRGALAMAYAISQNPKASEKAFILPSANADEAAFVQNLKILP
ANTLLEVCAHLNTASGMPGLVPYVARHDKQSPEYPDFSEVKGQFKVKRALEIAAAGNHSVLMSGPPGTGKTMLASRFAGI
LPPMTDKEAIESAAIQSLSGQFNPSRWKTRPFRSPHHTASAIALIGGGSTPRPGEVSLAHHGVLFLDELPEFDRHVLEVL
REPLESGHIVISRAARQADFPARFQLIAAMNPCPCGYYGHPSGKCHCSPDSIARYQRKISGPLLDRIDIQVSVNALKQEE
LSRFAETGESSEAIASRVRKAYDIQLKRQGKPNNQLTTREIDDFCLLDESGERLLKEAMARLMWSARAYHRILKISRTIA
DLARTETIRPEHVAEAIQYRRALKEN

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=694673 NB636_RS09275 WP_269278225.1 1924613..1926133(+) (comM) [Oxalobacter aliiformigenes strain BA2]
ATGAGTCTCGCGATTTTAAAAAGCCGTGCTCTTTCAGGCATGAAAGCCCCGGAAGTGACCGTGGAAGTCCATTTGGCAAA
CGGTCTGCCTTCTTTCACTATCGTCGGTTTGCCGGAAACCGAGGTCAAGGAAGCCAAAGATCGCGTCAGGGCAGCCTTGC
AAAACATCCGGTTCGAATTTCCGGCAAGGCGAATAACGGTCAACCTCGCTCCGGCCGATCTTCCAAAAGAATCGGGCCGG
TTTGATTTGCCGATCGCCCTGGGGATCCTGGCAGCATCCGGACAAATCCGTCAGGATCAGCTGGACCGCTATGAATTTGC
CGGAGAGTTATCGTTATCCGGAGAACTCCGTGCAATTCGCGGAGCACTGGCAATGGCCTATGCGATAAGCCAGAATCCAA
AGGCATCCGAGAAAGCTTTCATTCTTCCGTCTGCCAACGCCGATGAAGCAGCCTTCGTACAAAATCTGAAAATTCTTCCG
GCCAATACCCTGCTTGAAGTCTGCGCCCACCTGAACACGGCTTCCGGTATGCCGGGCTTGGTTCCCTATGTCGCCCGACA
TGACAAACAGAGTCCCGAATACCCCGATTTCAGCGAGGTCAAGGGACAATTCAAAGTAAAAAGGGCGCTCGAAATCGCCG
CAGCCGGCAATCACAGCGTCCTGATGAGCGGGCCTCCCGGGACCGGCAAAACCATGCTGGCATCACGTTTTGCAGGAATA
TTGCCTCCCATGACGGACAAGGAAGCCATTGAATCGGCCGCCATTCAGTCCCTGAGTGGCCAGTTCAATCCGTCCCGATG
GAAAACGCGACCTTTCCGTTCCCCTCACCATACTGCTTCCGCCATCGCCCTGATCGGAGGCGGGAGTACACCCCGTCCAG
GCGAAGTCTCTCTGGCACATCACGGTGTTCTTTTCCTGGATGAATTGCCCGAATTCGACCGCCATGTTCTGGAAGTACTC
CGTGAACCGCTTGAATCCGGACACATCGTCATCTCGCGTGCCGCCAGACAGGCTGATTTTCCTGCCCGATTCCAGCTCAT
TGCCGCAATGAATCCCTGTCCTTGCGGTTATTACGGTCATCCTTCCGGGAAATGTCACTGCTCTCCTGACTCTATTGCCC
GTTACCAGCGTAAAATATCCGGACCTCTTCTGGATCGGATCGACATTCAGGTATCTGTCAATGCCTTGAAACAGGAAGAA
TTGTCCAGATTCGCCGAAACAGGCGAATCTTCCGAAGCAATCGCTTCCCGGGTCAGGAAAGCTTACGACATTCAGCTGAA
AAGACAGGGTAAACCGAACAACCAGCTTACCACCCGGGAAATAGATGACTTTTGTCTTCTCGACGAGTCCGGTGAACGTT
TGCTCAAGGAGGCGATGGCCAGACTCATGTGGTCGGCACGCGCTTACCATCGTATTCTGAAAATTTCAAGAACGATTGCC
GATCTGGCCCGAACGGAAACGATCAGGCCGGAACATGTGGCGGAAGCAATTCAGTACAGAAGGGCTCTGAAAGAAAACTG
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(408-500)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(196-400)

Subunit ChlI of Mg-chelatase (ChlI)

(21-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.118

100

0.545
  comM Vibrio campbellii strain DS40M4

53.922

100

0.543
  comM Glaesserella parasuis strain SC1401

53.28

99.407

0.53
  comM Legionella pneumophila str. Paris

51.976

100

0.52
  comM Legionella pneumophila strain ERS1305867

51.976

100

0.52
  comM Haemophilus influenzae Rd KW20

51.69

99.407

0.514
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

48.406

99.209

0.48