Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NB644_RS02000 Genome accession   NZ_CP098246
Coordinates   400936..402456 (-) Length   506 a.a.
NCBI ID   WP_005882028.1    Uniprot ID   C3XBU6
Organism   Oxalobacter formigenes strain HOxSLD-2     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 395936..407456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NB644_RS01970 (NB644_01965) ttcA 396401..397228 (-) 828 WP_081442206.1 tRNA 2-thiocytidine(32) synthetase TtcA -
  NB644_RS01975 (NB644_01970) - 397252..397647 (-) 396 WP_005882040.1 dihydroneopterin aldolase -
  NB644_RS01980 (NB644_01975) - 397652..398440 (-) 789 WP_005882037.1 SDR family oxidoreductase -
  NB644_RS01985 (NB644_01980) - 398599..399750 (+) 1152 WP_005882035.1 class I SAM-dependent methyltransferase -
  NB644_RS01990 (NB644_01985) - 399766..400365 (-) 600 WP_005882033.1 hypothetical protein -
  NB644_RS01995 (NB644_01990) - 400488..400886 (-) 399 WP_005882031.1 DUF1840 domain-containing protein -
  NB644_RS02000 (NB644_01995) comM 400936..402456 (-) 1521 WP_005882028.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NB644_RS02005 (NB644_02000) - 402453..402719 (-) 267 WP_005882025.1 accessory factor UbiK family protein -
  NB644_RS02010 (NB644_02005) gshA 403092..404387 (+) 1296 WP_005882024.1 glutamate--cysteine ligase -
  NB644_RS02015 (NB644_02010) gshB 404397..405337 (+) 941 Protein_387 glutathione synthase -
  NB644_RS02020 (NB644_02015) - 405471..405878 (+) 408 WP_036603231.1 PTS sugar transporter subunit IIA -
  NB644_RS02025 (NB644_02020) - 405972..406241 (+) 270 WP_005882018.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55338.37 Da        Isoelectric Point: 8.1893

>NTDB_id=694654 NB644_RS02000 WP_005882028.1 400936..402456(-) (comM) [Oxalobacter formigenes strain HOxSLD-2]
MSLAILKSRALAGMDAPEVTVEVHLANGLPSFTIVGLAETEVKEAKDRVRAAIQNARFEFPARRITVNLAPADLPKESGR
FDLPIALGILAASKQINTDHLDKYEFAGELSLSGELRPIRGALAMSFAIAKSNTASSRQGFILPYDNADEAAFVRNLTIL
PAKTLLDVCAHLNGLPETPVLAPHVSGTDNVYPRYPDFDEVKGQQKAKRALEVAAAGNHSVLMSGPPGTGKTMLASRFPG
ILPPMTEDEAIESAAISSVTGKFQASQWKTRPFRSPHHTASAIALIGGGGSPRPGEVSLAHRGVLFLDELPEFDRHVLEV
LREPLESGHIVISRAARQADFPARFQLIAAMNPCPCGYLGHPSGKCHCTPDAVARYQRKISGPLLDRIDIQIQVNALKQE
ELSRQPPGDSSATIAKRVCDAWRIQLERQGKANNLLNTKEIDEFCRLDEAGENLLKEAMNRFMWSARAYHRILKIGRTIA
DLAQTVNIKQEHIAEAIQYRRTLRET

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=694654 NB644_RS02000 WP_005882028.1 400936..402456(-) (comM) [Oxalobacter formigenes strain HOxSLD-2]
ATGAGTCTTGCCATCCTCAAAAGCCGTGCGCTGGCTGGTATGGACGCGCCTGAAGTCACCGTTGAAGTGCATCTGGCGAA
TGGATTGCCTTCTTTTACGATAGTCGGGCTGGCGGAAACGGAAGTCAAGGAAGCCAAGGACCGAGTCAGGGCCGCCATCC
AGAATGCCCGATTCGAGTTCCCGGCCAGAAGGATCACGGTCAATCTGGCTCCGGCTGATCTGCCCAAGGAATCCGGACGC
TTCGATTTGCCCATCGCACTGGGTATTCTCGCAGCTTCGAAACAGATCAATACAGACCATCTGGACAAATACGAATTTGC
CGGCGAACTGTCTTTGTCCGGTGAACTGCGTCCCATTCGGGGCGCACTGGCCATGTCGTTCGCCATTGCGAAATCGAATA
CAGCTTCATCAAGACAGGGGTTCATCCTGCCCTACGACAATGCCGATGAAGCGGCCTTTGTGCGCAATCTGACGATATTG
CCAGCAAAAACCCTGCTGGATGTGTGTGCCCATCTGAATGGTTTGCCTGAGACTCCGGTGCTGGCGCCTCATGTTTCAGG
CACGGATAACGTTTATCCCCGGTATCCCGATTTTGACGAAGTCAAAGGCCAGCAAAAGGCCAAAAGAGCGCTCGAAGTCG
CTGCCGCAGGAAATCACAGCGTCCTGATGAGCGGACCTCCCGGAACCGGCAAAACAATGCTGGCATCCCGCTTTCCCGGA
ATATTGCCGCCCATGACGGAAGACGAGGCAATCGAATCAGCCGCCATTTCATCCGTGACCGGCAAATTTCAGGCGTCCCA
ATGGAAAACCCGCCCCTTCCGCTCGCCGCATCATACCGCATCTGCCATTGCCCTGATCGGTGGCGGTGGTTCACCCCGGC
CGGGTGAAGTTTCACTTGCACACAGAGGCGTTTTGTTTCTGGATGAATTGCCCGAATTCGACCGCCATGTTCTGGAAGTT
CTGCGCGAGCCGCTTGAATCAGGCCATATCGTCATTTCCCGTGCAGCGCGACAGGCCGACTTTCCTGCACGTTTCCAGCT
GATCGCAGCCATGAATCCCTGTCCGTGCGGATATCTCGGCCATCCATCCGGAAAATGTCACTGCACACCGGACGCCGTAG
CCCGATACCAGCGAAAAATATCCGGCCCCCTGCTCGACCGGATCGATATCCAGATTCAGGTCAATGCGCTGAAACAGGAA
GAACTGTCCCGACAGCCTCCCGGAGACTCATCCGCAACGATTGCCAAACGGGTTTGCGATGCCTGGCGCATTCAGCTTGA
GCGGCAGGGAAAAGCGAACAACCTGTTGAACACGAAAGAAATCGACGAATTCTGCAGACTGGATGAAGCCGGGGAAAATC
TGCTGAAAGAAGCGATGAACCGTTTCATGTGGTCGGCCCGTGCCTATCACAGAATCCTCAAGATCGGTCGCACTATCGCC
GATCTTGCACAAACTGTTAATATCAAACAAGAACATATTGCAGAAGCCATACAATATAGAAGAACATTACGCGAAACCTG
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-147)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(409-500)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(197-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C3XBU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

52.14

100

0.53
  comM Vibrio cholerae strain A1552

52.183

99.605

0.52
  comM Vibrio campbellii strain DS40M4

52.191

99.209

0.518
  comM Legionella pneumophila strain ERS1305867

51.581

100

0.516
  comM Legionella pneumophila str. Paris

51.581

100

0.516
  comM Glaesserella parasuis strain SC1401

51.383

100

0.514
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.233

100

0.472