Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NB639_RS08805 Genome accession   NZ_CP098244
Coordinates   1965518..1967038 (+) Length   506 a.a.
NCBI ID   WP_269307327.1    Uniprot ID   -
Organism   Oxalobacter formigenes strain OxWR1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1960518..1972038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NB639_RS08780 (NB639_08760) - 1961727..1961996 (-) 270 WP_269307323.1 HPr family phosphocarrier protein -
  NB639_RS08785 (NB639_08765) - 1962090..1962497 (-) 408 WP_036603231.1 PTS sugar transporter subunit IIA -
  NB639_RS08790 (NB639_08770) gshB 1962632..1963573 (-) 942 WP_269307324.1 glutathione synthase -
  NB639_RS08795 (NB639_08775) gshA 1963583..1964878 (-) 1296 WP_269307325.1 glutamate--cysteine ligase -
  NB639_RS08800 (NB639_08780) - 1965252..1965521 (+) 270 WP_269307326.1 accessory factor UbiK family protein -
  NB639_RS08805 (NB639_08785) comM 1965518..1967038 (+) 1521 WP_269307327.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NB639_RS08810 (NB639_08790) - 1967088..1967486 (+) 399 WP_005882031.1 DUF1840 domain-containing protein -
  NB639_RS08815 (NB639_08795) - 1967609..1968208 (+) 600 WP_005882033.1 hypothetical protein -
  NB639_RS08820 (NB639_08800) - 1968224..1969375 (-) 1152 WP_005882035.1 class I SAM-dependent methyltransferase -
  NB639_RS08825 (NB639_08805) - 1969534..1970322 (+) 789 WP_005882037.1 SDR family oxidoreductase -
  NB639_RS08830 (NB639_08810) - 1970327..1970722 (+) 396 WP_005882040.1 dihydroneopterin aldolase -
  NB639_RS08835 (NB639_08815) ttcA 1970746..1971573 (+) 828 WP_081442206.1 tRNA 2-thiocytidine(32) synthetase TtcA -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55391.48 Da        Isoelectric Point: 7.9779

>NTDB_id=694629 NB639_RS08805 WP_269307327.1 1965518..1967038(+) (comM) [Oxalobacter formigenes strain OxWR1]
MSLAILKSRALTGMDAPEVTVEVHLANGLPSFTIVGLAETEVKEAKDRVRAAIQNARFEFPARRITVNLAPADLPKESGR
FDLPIALGILAASKQINADHLDKYEFAGELSLSGELRPIRGALAMSFAIAKSNTASIKQGFILPFDNADEAAFVRNLTIL
PAKTLLDVCAHLNGLPDNPVLTPHVSEGENVYPRYPDFDEVKGQQKAKRALEVAAAGNHSVLMSGPPGTGKTMLASRFPG
ILPPMTEDEAIESAAISSVTGKFQASQWKTRPFRSPHHTASAIALIGGGGSPRPGEVSLAHRGVLFLDELPEFDRHVLEV
LREPLESGHIVISRAARQADFPARFQLIAAMNPCPCGYLGHPSGKCHCTPDAVARYQRKISGPLLDRIDIQIQVNALKQE
ELSRQPPGDSSATIAKRVCDAWRIQLERQGKANNLLNTKEIDEFCRLDEAGENLLKEAMNRFMWSARAYHRILKIGRTIA
DLAQTVNIKQEHIAEAIQYRRTLRET

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=694629 NB639_RS08805 WP_269307327.1 1965518..1967038(+) (comM) [Oxalobacter formigenes strain OxWR1]
ATGAGTCTTGCCATCCTCAAAAGCCGTGCACTGACGGGTATGGATGCGCCCGAAGTCACCGTCGAGGTACATCTGGCGAA
TGGATTGCCTTCTTTTACGATCGTCGGGCTGGCGGAAACGGAAGTCAAGGAAGCGAAGGATCGTGTCAGGGCAGCTATCC
AGAATGCCAGATTCGAGTTTCCGGCCAGAAGGATTACGGTCAATCTGGCGCCTGCCGATCTGCCGAAAGAATCCGGACGC
TTTGATTTGCCTATCGCACTGGGTATTCTCGCGGCATCGAAACAGATCAATGCAGACCATCTGGACAAATATGAATTTGC
CGGCGAACTGTCCTTGTCCGGAGAACTGCGCCCCATCCGGGGTGCACTGGCCATGTCGTTTGCGATTGCAAAATCGAACA
CGGCATCAATAAAACAGGGATTCATCCTGCCCTTTGACAATGCCGATGAAGCGGCCTTTGTGCGCAATCTGACAATATTG
CCCGCCAAAACCCTGCTGGATGTCTGTGCCCATTTAAATGGATTGCCCGACAATCCGGTATTGACGCCTCATGTGTCAGA
GGGGGAAAACGTTTATCCCCGATATCCGGACTTCGACGAAGTCAAAGGCCAGCAAAAAGCCAAAAGAGCACTCGAAGTCG
CTGCAGCAGGAAACCACAGCGTCCTGATGAGTGGTCCACCGGGAACAGGCAAAACCATGCTCGCATCCCGTTTTCCCGGA
ATCTTGCCCCCTATGACGGAAGACGAGGCAATCGAATCAGCCGCCATTTCATCCGTGACCGGCAAATTTCAGGCGTCCCA
ATGGAAAACCCGCCCCTTCCGCTCGCCGCATCATACCGCATCTGCCATTGCCCTGATCGGTGGCGGTGGTTCACCCCGGC
CGGGTGAAGTTTCACTTGCACACAGAGGCGTTTTGTTTCTGGATGAATTGCCCGAATTCGACCGCCATGTTCTGGAAGTT
CTGCGCGAGCCGCTTGAATCAGGCCATATCGTCATTTCCCGTGCAGCGCGACAGGCCGACTTTCCTGCACGTTTCCAGCT
GATCGCAGCCATGAATCCCTGTCCGTGCGGATATCTCGGCCATCCATCCGGAAAATGTCACTGCACACCGGACGCCGTAG
CCCGATACCAGCGAAAAATATCCGGCCCCCTGCTCGACCGGATCGATATCCAGATTCAGGTCAATGCGCTGAAACAGGAA
GAACTGTCCCGACAGCCTCCCGGAGACTCATCCGCAACGATTGCCAAACGGGTTTGCGATGCCTGGCGCATTCAGCTTGA
GCGGCAGGGAAAAGCGAACAACCTGTTGAACACGAAAGAAATCGACGAATTCTGCAGACTGGATGAAGCCGGGGAAAATC
TGCTGAAAGAAGCGATGAACCGTTTCATGTGGTCGGCCCGTGCCTATCACAGAATCCTCAAGATCGGTCGCACTATCGCC
GATCTTGCACAAACTGTTAATATCAAACAAGAACATATTGCAGAAGCCATACAATATAGAAGAACATTACGCGAAACCTG
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-147)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(197-401)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(409-500)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

53.021

100

0.538
  comM Vibrio campbellii strain DS40M4

52.485

99.407

0.522
  comM Glaesserella parasuis strain SC1401

51.976

100

0.52
  comM Vibrio cholerae strain A1552

52.39

99.209

0.52
  comM Legionella pneumophila str. Paris

51.172

100

0.518
  comM Legionella pneumophila strain ERS1305867

51.172

100

0.518
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.233

100

0.472