Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NB639_RS07195 Genome accession   NZ_CP098244
Coordinates   1604358..1604834 (-) Length   158 a.a.
NCBI ID   WP_005881460.1    Uniprot ID   C3XAY9
Organism   Oxalobacter formigenes strain OxWR1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1599358..1609834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NB639_RS07180 (NB639_07165) - 1600444..1601394 (-) 951 WP_005881453.1 ZIP family metal transporter -
  NB639_RS07185 (NB639_07170) - 1601736..1602932 (+) 1197 WP_269307254.1 MFS transporter -
  NB639_RS07190 (NB639_07175) - 1602940..1604115 (-) 1176 WP_269307255.1 SIR2 family protein -
  NB639_RS07195 (NB639_07180) ssb 1604358..1604834 (-) 477 WP_005881460.1 single-stranded DNA-binding protein Machinery gene
  NB639_RS07200 (NB639_07185) uvrA 1605101..1607965 (+) 2865 WP_005881462.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17798.79 Da        Isoelectric Point: 7.0191

>NTDB_id=694625 NB639_RS07195 WP_005881460.1 1604358..1604834(-) (ssb) [Oxalobacter formigenes strain OxWR1]
MASINKVIIVGNLGRDPENRYLPSGEQVTSIAVATTDRWRDKASGEQKEQTEWHRISFFGKLAEIAGQYLKKGSQVYIEG
RLRTRKYTDKEGIDRYATEIIADTMQMLGSRQGAGEPPEERGSYQPPSRPAQNTQQQRPQQSNRPAGLSPDMDDDIPF

Nucleotide


Download         Length: 477 bp        

>NTDB_id=694625 NB639_RS07195 WP_005881460.1 1604358..1604834(-) (ssb) [Oxalobacter formigenes strain OxWR1]
ATGGCGTCGATCAACAAGGTTATCATTGTCGGTAATCTCGGCCGCGATCCGGAAAATCGCTATCTGCCAAGTGGTGAACA
GGTCACCAGTATCGCTGTAGCCACGACCGATCGGTGGCGTGACAAAGCCTCGGGCGAGCAGAAAGAACAGACCGAATGGC
ACCGTATTTCCTTCTTCGGCAAACTGGCTGAAATTGCAGGCCAGTACCTGAAAAAGGGTTCGCAGGTCTACATTGAAGGA
CGCCTGAGAACACGCAAATACACCGACAAGGAAGGCATCGACCGTTACGCGACCGAAATCATCGCCGATACCATGCAAAT
GCTCGGCAGCCGTCAGGGTGCCGGTGAGCCGCCGGAAGAACGTGGCAGCTATCAGCCGCCATCCCGTCCGGCACAGAACA
CCCAGCAGCAACGTCCGCAACAGAGCAACCGGCCAGCCGGATTGTCACCGGATATGGATGACGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C3XAY9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.237

100

0.608
  ssb Glaesserella parasuis strain SC1401

47.778

100

0.544
  ssb Neisseria meningitidis MC58

46.369

100

0.525
  ssb Neisseria gonorrhoeae MS11

47.126

100

0.519
  ssb Latilactobacillus sakei subsp. sakei 23K

33.143

100

0.367