Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   NBE99_RS02205 Genome accession   NZ_CP098039
Coordinates   451817..452179 (-) Length   120 a.a.
NCBI ID   WP_250682885.1    Uniprot ID   -
Organism   Thermosynechococcus sp. HN-54     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 446817..457179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBE99_RS02180 (NBE99_02175) - 447181..447936 (+) 756 WP_250682880.1 MBL fold metallo-hydrolase -
  NBE99_RS02185 (NBE99_02180) - 447939..448430 (+) 492 WP_250682881.1 phosphate-starvation-inducible PsiE family protein -
  NBE99_RS02190 (NBE99_02185) - 448407..449267 (-) 861 WP_315897301.1 prephenate/arogenate dehydrogenase -
  NBE99_RS02195 (NBE99_02190) - 449423..450550 (+) 1128 WP_250682883.1 HhoA/HhoB/HtrA family serine endopeptidase -
  NBE99_RS02200 (NBE99_02195) - 450552..451814 (+) 1263 WP_250682884.1 phospholipid carrier-dependent glycosyltransferase -
  NBE99_RS02205 (NBE99_02200) pilH 451817..452179 (-) 363 WP_250682885.1 response regulator transcription factor Machinery gene
  NBE99_RS02210 (NBE99_02205) - 452296..453156 (-) 861 WP_250682886.1 energy-coupling factor ABC transporter ATP-binding protein -
  NBE99_RS02215 (NBE99_02210) cbiQ 453158..453949 (-) 792 WP_250682887.1 cobalt ECF transporter T component CbiQ -
  NBE99_RS02220 (NBE99_02215) - 453957..454262 (-) 306 WP_250682888.1 energy-coupling factor ABC transporter substrate-binding protein -
  NBE99_RS02225 (NBE99_02220) - 454255..455031 (-) 777 WP_250682889.1 energy-coupling factor ABC transporter permease -
  NBE99_RS02230 (NBE99_02225) - 455278..455583 (+) 306 WP_149821405.1 cell division protein SepF -
  NBE99_RS02235 (NBE99_02230) - 455591..455977 (+) 387 WP_250682890.1 hypothetical protein -
  NBE99_RS02240 (NBE99_02235) recF 455916..457055 (-) 1140 WP_250682891.1 DNA replication/repair protein RecF -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13514.76 Da        Isoelectric Point: 4.5045

>NTDB_id=693795 NBE99_RS02205 WP_250682885.1 451817..452179(-) (pilH) [Thermosynechococcus sp. HN-54]
MATIMVVDDSPTLRAMIVELMKEQRYDVVEAEDGVEAQEKIKAQCPDLVILDVVMPRMNGYELCRWIKGEAASQNVPVIM
CTTKSEEFDIHWGKKQGVDAYITKPFDPAELIATVKRLLG

Nucleotide


Download         Length: 363 bp        

>NTDB_id=693795 NBE99_RS02205 WP_250682885.1 451817..452179(-) (pilH) [Thermosynechococcus sp. HN-54]
ATGGCCACAATTATGGTTGTTGATGACAGCCCCACCCTGCGGGCAATGATTGTTGAACTGATGAAAGAGCAACGTTACGA
CGTTGTTGAGGCCGAGGATGGTGTCGAAGCCCAAGAAAAGATCAAGGCTCAATGCCCTGATTTGGTGATTCTCGATGTGG
TGATGCCGCGCATGAATGGCTATGAACTGTGCCGCTGGATTAAGGGGGAAGCGGCCTCCCAAAATGTGCCCGTGATCATG
TGCACCACCAAAAGTGAAGAGTTTGATATTCACTGGGGTAAAAAGCAGGGGGTAGATGCCTACATCACCAAACCCTTTGA
TCCCGCAGAACTCATTGCCACCGTCAAACGGCTCTTGGGATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

55.462

99.167

0.55
  micA Streptococcus pneumoniae Cp1015

39.496

99.167

0.392
  pilG Acinetobacter baumannii strain A118

41.228

95

0.392
  chpA Acinetobacter baumannii strain A118

40.517

96.667

0.392
  vicR Streptococcus mutans UA159

37.931

96.667

0.367