Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NAL25_RS23935 Genome accession   NZ_CP098030
Coordinates   5043818..5045341 (+) Length   507 a.a.
NCBI ID   WP_182265674.1    Uniprot ID   -
Organism   Serratia ureilytica strain HNU47     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5038818..5050341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NAL25_RS23910 (NAL25_23885) - 5039019..5039945 (-) 927 WP_182265677.1 branched-chain amino acid transaminase -
  NAL25_RS23915 (NAL25_23890) ilvM 5039969..5040226 (-) 258 WP_004929955.1 acetolactate synthase 2 small subunit -
  NAL25_RS23920 (NAL25_23895) ilvG 5040223..5041869 (-) 1647 WP_193550320.1 acetolactate synthase 2 catalytic subunit -
  NAL25_RS23925 (NAL25_23900) ilvL 5042012..5042110 (-) 99 WP_013814970.1 ilv operon leader peptide -
  NAL25_RS23930 (NAL25_23905) - 5042244..5043476 (-) 1233 WP_033645380.1 MFS transporter -
  NAL25_RS23935 (NAL25_23910) comM 5043818..5045341 (+) 1524 WP_182265674.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NAL25_RS23940 (NAL25_23915) - 5045370..5045708 (-) 339 WP_004929946.1 DUF413 domain-containing protein -
  NAL25_RS23945 (NAL25_23920) hdfR 5045828..5046655 (+) 828 WP_033645382.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54524.86 Da        Isoelectric Point: 7.9608

>NTDB_id=693655 NAL25_RS23935 WP_182265674.1 5043818..5045341(+) (comM) [Serratia ureilytica strain HNU47]
MSLAVIYSRAIIGVQAPSVTVEVHISNGLPGLTLVGLPETTVKEARDRVRSALINNGFTFPARRITVNLAPADLPKEGGR
YDLPIALAILAASEQLPLAPLARYEFLGELALSGALRAVRGAIPAALAAANAGRQLVLSTDNAAEVGLIAQSQSHTAQHL
LEVCAFLLGQGELPVAVMPPAADNPHENADLRDIIGQEQAKRALEIAAAGGHNLLLIGPPGTGKTMLASRLTGLLPPLTE
PEALESLAVASLQHPVLTALPWRQRPFRAPHHSASMAALVGGGSLPRPGEISLAHNGVLFLDELPEFQRKVLDALREPLE
SGEIVISRANAKVCFPAKVQLIAAMNPSPTGHYQGMHNRASPQQMLRYLARLSGPFLDRFDLSIEVPLLPPGTLSKRQTQ
GESSEQVRERVRQARTRQLERAGKINALLTNREVERDCVLQAADAEFLEATLNALGLSVRAWQRILKVARTLADLAGDAE
IGRHHLSEALSYRSMDRLLLQLHRSLE

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=693655 NAL25_RS23935 WP_182265674.1 5043818..5045341(+) (comM) [Serratia ureilytica strain HNU47]
ATGTCACTGGCGGTAATCTATAGCCGCGCCATCATCGGCGTTCAGGCCCCTTCCGTAACGGTAGAGGTGCATATCAGCAA
TGGCCTGCCCGGCCTGACGCTGGTTGGCCTGCCGGAAACCACGGTAAAAGAGGCGCGCGATCGGGTGCGCAGCGCCCTGA
TCAACAACGGTTTCACCTTTCCCGCCCGGCGCATCACCGTCAATTTGGCACCGGCCGATCTGCCGAAAGAAGGCGGGCGC
TACGATCTGCCGATTGCGCTGGCGATCCTCGCCGCCTCCGAGCAACTGCCCCTCGCACCGTTGGCACGCTACGAGTTTCT
TGGCGAACTGGCGCTGTCCGGCGCGCTGCGCGCGGTCAGAGGCGCCATCCCGGCGGCGCTGGCGGCGGCTAACGCCGGGC
GACAATTGGTCCTCTCGACGGACAACGCCGCCGAGGTCGGCCTGATCGCGCAGTCACAATCCCATACTGCCCAACACCTG
TTGGAGGTCTGTGCCTTTTTGCTCGGCCAGGGCGAGCTGCCGGTAGCCGTCATGCCTCCCGCGGCAGACAACCCGCACGA
AAACGCCGATCTGCGCGACATCATCGGCCAGGAGCAGGCCAAGCGGGCATTAGAGATCGCCGCCGCCGGCGGGCATAACC
TATTGTTGATTGGGCCGCCGGGCACCGGTAAAACCATGCTGGCCAGTCGACTGACTGGCTTACTGCCGCCGCTGACGGAA
CCCGAGGCGCTGGAGAGCCTGGCGGTCGCCAGCTTGCAGCATCCTGTTCTCACCGCTTTGCCATGGCGCCAGAGGCCATT
TCGCGCACCGCATCACAGCGCATCGATGGCGGCGTTGGTCGGCGGCGGCTCACTGCCGCGCCCGGGTGAGATATCTTTGG
CGCATAACGGCGTGCTGTTTCTGGATGAGCTGCCGGAATTCCAGCGTAAGGTGCTGGATGCGCTGCGTGAACCGCTGGAA
TCCGGCGAGATCGTGATTTCACGCGCCAACGCCAAGGTCTGCTTCCCGGCCAAGGTGCAATTGATCGCGGCGATGAATCC
CAGCCCAACCGGGCATTACCAGGGTATGCATAATCGCGCCTCGCCGCAGCAGATGCTGCGCTACCTGGCCCGGCTGTCAG
GGCCTTTTCTCGATCGTTTCGATCTGTCTATCGAAGTGCCGCTGTTACCTCCAGGTACGCTCAGTAAGCGGCAAACTCAG
GGAGAAAGCAGCGAGCAGGTGCGGGAAAGAGTGCGACAGGCACGCACCCGGCAGCTCGAACGCGCCGGTAAAATCAACGC
GCTGTTAACCAACCGTGAAGTGGAACGGGATTGCGTGTTGCAGGCGGCAGACGCCGAGTTTTTGGAAGCGACATTAAACG
CGTTGGGGTTATCGGTCCGCGCCTGGCAGCGCATCTTGAAAGTGGCGCGCACGCTGGCGGATTTGGCGGGGGATGCCGAG
ATCGGCAGGCACCACCTCAGCGAAGCGCTGAGCTATCGCAGTATGGACCGTCTGCTGTTACAACTGCATCGTAGTCTGGA
ATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

66.403

99.803

0.663
  comM Glaesserella parasuis strain SC1401

66.272

100

0.663
  comM Vibrio cholerae strain A1552

65.339

99.014

0.647
  comM Vibrio campbellii strain DS40M4

64.741

99.014

0.641
  comM Legionella pneumophila str. Paris

51.503

98.422

0.507
  comM Legionella pneumophila strain ERS1305867

51.503

98.422

0.507
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.154

100

0.462